Protein

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Genbank accession
XYO05344.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,86
Protein sequence
MALQLDMFYRVPLGRKLTNSEVDTNFSRLATACGQLEQMVGEGNNPQPAIDAAIAAHVAQPNPHTQYLIEAPNDNKTYGRRNQTWVETGGLSRLNTSISTATSFVPDYYVVRDNCGVVFEHVAASYANNPSKAVIPAALFHMIGGLDDQEGAQGGNRLDGHMICVFNLTSINTPIDFAIGQEIRLNCNKSKVKEFIGTQHVIQPTNQGTGTCDKYVLENFNDMRSAVTHIGKFTREFLDPRIITTHAGGTFHAGDTITASRMLTLSDAGKSFMVNANSNVTLTIPRDWPAGAQMTFVQSGAGKIIIALESWETNAMYSRGDRVQTEKLLDEVTIRSFQYGAIVLTFNLG
Physico‐chemical
properties
protein length:349 AA
molecular weight: 38170,63480 Da
isoelectric point:5,98716
aromaticity:0,08023
hydropathy:-0,20802

Domains

Domains [InterPro]
DC_1294
ATT
1–66
DC_1294 G3DSA:6.20.230.10 DC_1166
G3DSA:6.20.230.10
ATT
67–90
G3DSA:6.20.230.10
XYO05344.1
1 349
Architecture
ATT
STR
ATT 1-90 | STR 91-348 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYO05344.1
1 349
Domain Start End Length (AA) Confidence
N-terminal 1 128 128 0,6724
Central domain 129 327 200 0,1235
C-terminal 328 349 21 0,9979
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-128
Central
129-327
C-terminal
328-349

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage PCCM_PaP007
[NCBI] 		3389958 Viruses >
Host Pseudomonas aeruginosa PAO1
[NCBI] 		208964 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYO05344.1 [NCBI]
Genbank nucleotide accession
PQ761517 [NCBI]
CDS location
range 18859 -> 19908
strand -
CDS
ATGGCACTCCAACTCGATATGTTCTACCGCGTCCCGCTGGGTCGCAAACTAACTAACTCTGAAGTTGACACCAACTTCAGCCGCCTGGCTACAGCTTGCGGTCAACTGGAGCAAATGGTGGGCGAGGGCAACAACCCTCAGCCAGCGATTGACGCGGCCATTGCCGCTCACGTAGCCCAGCCCAACCCTCACACGCAATACCTGATCGAAGCCCCCAACGATAACAAGACGTATGGACGTCGGAACCAGACTTGGGTTGAAACCGGGGGTCTGTCCCGACTCAACACCAGCATCAGCACGGCAACCAGCTTTGTGCCGGACTACTATGTCGTGCGGGACAACTGCGGTGTTGTGTTTGAACACGTAGCGGCAAGCTACGCTAACAACCCGTCCAAGGCTGTTATTCCGGCTGCTCTGTTCCACATGATTGGTGGCCTGGATGACCAGGAAGGCGCACAAGGTGGTAACCGTCTCGACGGCCACATGATTTGCGTGTTTAACCTGACCAGTATCAATACCCCTATCGACTTTGCCATCGGGCAGGAGATTCGCCTCAACTGCAACAAGAGCAAAGTCAAAGAGTTCATTGGTACCCAGCACGTTATCCAGCCCACCAACCAGGGTACCGGCACCTGCGATAAGTATGTGCTGGAAAACTTCAATGATATGCGCAGCGCTGTTACGCACATCGGCAAGTTTACGCGGGAGTTCCTGGACCCCCGTATCATAACCACACACGCCGGCGGGACTTTCCATGCGGGCGACACCATTACCGCCAGCCGTATGCTCACCCTGTCTGACGCCGGTAAAAGCTTCATGGTTAACGCCAACAGCAACGTTACCTTGACCATCCCCAGGGACTGGCCAGCCGGCGCGCAAATGACGTTTGTGCAGTCAGGGGCTGGTAAAATCATCATTGCTCTGGAGTCCTGGGAGACCAACGCCATGTACTCCCGTGGGGACCGTGTACAAACCGAGAAGCTGCTGGACGAAGTAACTATCCGTAGCTTCCAGTACGGCGCCATTGTCCTCACCTTCAACCTTGGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0c7b4b93f8db61f4c6b52c9684f5aeb048f8e7191a13079191346e279e576ec6
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,5478
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50