Protein

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Genbank accession
APC46441.1 [GenBank]
Protein name
collagen triple helix repeat-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MTFTPIAPGTTNWDVPLNGALTTQDNSLASAQGDIAGLQSSVAALQTSVAALNGIVTGATFYRLVAASDASAEVKAKADYVCDGAGDQVEIQAAINAAQLEGGGAIQLSEGTFNIASPLVINGTLTETNPRTIILNGCGQYATMIVPTINVNGIALSDWAQCTISNLGIQINGSGSGIVATGVTSGTTRSFWNSSFTNIRVTGSYVTTNTGWGMNLEMPYRSTFDNIEIEGTRNGIKLVNTNSSTTSGYSSFERIRIDLVGTNGVGIHLRSDSGNLSRNTFNLMDMRAASTGCTGILVDGAANSRSHRFWAADIDQFSIAVAATSCESTVFDINYLAGDVNQAGNKGFVAGAASFNNVFSARKVLIGTADALSVFEDNGTTADSPNIFERIRIENSAGGTVTYSRQPHTVQRDIVTGNLGNPLPAGLLQYPTSGYNNPEFRASDHGLISWTTDTVTASNTSITQAGIPIYTKIKLTERVNLITNILVVITTAGATLTANQNFAGIYDSSGTRLGVTADQSGTWNSTGLKTMALTAPLTLGPGYYYIALLTNGTTQPTFLAAGATAQGVGINANLTVATARALSGPAGGVTSLPASVTLGSQVLTGAVRWSGLT
Physico‐chemical
properties
protein length:613 AA
molecular weight: 63481,02340 Da
isoelectric point:5,03960
aromaticity:0,06852
hydropathy:0,06411

Domains

Domains [InterPro]
DC_1206
ATT
1–65
DC_1206 IPR012334
IPR011050
STR
64–404
IPR011050
IPR012334
STR
76–361
IPR012334
APC46441.1
1 613
Architecture
ATT
STR
ATT 1-65 | STR 66-404 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
APC46441.1
1 613
Domain Start End Length (AA) Confidence
N-terminal 1 88 88 0,9649
Central domain 89 428 341 0,9864
C-terminal 429 613 184 0,9807
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-88
Central
89-428
C-terminal
429-613

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptomyces phage BRock
[NCBI] 		1913591 Uroviricota > Caudoviricetes > Borockvirus >
Host Streptomyces sp.
[NCBI] 		1931 cellular organisms > Bacteria > Bacillati > Actinomycetota > Actinomycetes > Kitasatosporales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
APC46441.1 [NCBI]
Genbank nucleotide accession
KX925554 [NCBI]
CDS location
range 107303 -> 109144
strand -
CDS
ATGACATTTACTCCTATCGCTCCGGGCACAACCAACTGGGATGTCCCGTTGAACGGTGCTCTGACGACTCAGGACAACAGTCTTGCCTCTGCACAGGGTGACATTGCCGGTTTGCAGTCCTCTGTGGCCGCGCTACAGACGTCTGTGGCTGCTCTGAACGGGATTGTGACGGGTGCGACGTTCTATCGCCTCGTAGCGGCTTCTGACGCCTCTGCTGAGGTCAAGGCGAAGGCTGATTACGTCTGTGATGGTGCTGGTGACCAAGTGGAAATCCAGGCGGCTATCAATGCAGCCCAATTGGAGGGTGGAGGGGCTATTCAGCTCTCCGAGGGAACCTTCAATATCGCGTCTCCGTTGGTAATCAACGGTACTCTTACCGAGACCAATCCCAGAACAATCATTCTGAATGGTTGTGGTCAGTACGCGACGATGATTGTTCCTACTATTAATGTGAACGGTATTGCGCTGTCTGATTGGGCTCAATGCACGATTTCCAACCTGGGAATCCAGATCAACGGCTCTGGCTCTGGAATTGTGGCCACAGGGGTGACTTCCGGTACTACACGCTCATTCTGGAACTCTTCTTTCACGAATATCCGTGTTACAGGGTCCTACGTGACGACAAATACGGGTTGGGGTATGAATTTGGAGATGCCTTATCGTTCCACGTTCGACAATATCGAGATCGAGGGTACGCGTAACGGCATCAAGTTGGTGAATACCAACTCTTCCACTACTTCTGGTTACAGCAGTTTTGAGCGTATCCGTATCGATCTGGTGGGAACTAACGGTGTCGGCATTCATTTGCGTTCAGACAGCGGTAACCTGAGCCGTAACACGTTCAATCTGATGGATATGCGTGCCGCTAGCACCGGATGTACAGGTATTTTGGTGGATGGAGCGGCTAATTCTCGTTCTCACCGCTTCTGGGCAGCAGATATTGATCAATTCAGCATCGCTGTGGCGGCCACTTCGTGTGAAAGCACCGTTTTTGACATCAATTACCTTGCTGGAGACGTGAATCAGGCCGGAAACAAGGGATTTGTGGCGGGAGCAGCGTCTTTCAACAATGTTTTCTCTGCCAGAAAGGTCCTTATCGGTACTGCTGATGCTCTGTCTGTCTTTGAGGACAACGGAACTACTGCGGATTCTCCGAATATTTTCGAGAGAATTCGTATTGAGAACAGTGCGGGAGGTACGGTAACGTATTCTCGTCAGCCGCACACGGTGCAAAGAGACATCGTCACGGGCAATTTGGGTAATCCTCTTCCTGCGGGTCTGCTACAGTATCCGACAAGTGGTTACAACAATCCGGAGTTCCGTGCGTCGGATCATGGACTTATCTCCTGGACTACTGATACAGTGACTGCATCAAACACGAGCATCACTCAGGCAGGTATTCCGATCTACACGAAGATCAAGCTCACAGAACGTGTTAATCTGATCACGAATATCCTGGTAGTAATTACTACAGCAGGTGCTACACTGACTGCTAACCAAAACTTTGCGGGTATCTACGATTCTTCGGGTACTCGTTTGGGTGTTACTGCGGATCAGTCGGGTACCTGGAACTCCACAGGGCTTAAGACGATGGCTTTGACAGCACCTCTTACCCTTGGTCCCGGCTACTACTACATCGCCCTCTTGACAAACGGGACCACACAGCCTACATTCTTGGCAGCGGGTGCAACCGCACAGGGAGTTGGTATCAACGCCAACCTGACTGTTGCTACAGCACGTGCTTTGAGCGGTCCTGCGGGTGGCGTGACATCGCTTCCTGCGTCTGTTACACTGGGATCTCAGGTACTAACCGGAGCAGTTCGTTGGTCTGGCTTGACCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
75e8c7e999536a61b1186ea7dde4dfc7d24a8558745d0c5972959d92c3d0b9dd
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8424
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Streptomyces 5a phage BRock Crossman,A., Baron,S., Jamdagni,P., Khatri,P., Sharma,D., Pandey,M., Goyal,S., Kumar,S., Phogat,A., Chawla,G., Pasricha,M., Gupta,K., Bazzad,D., Aggarwal,V., Poughat,A., Singh,K., Rana,P., Gautam,R., Sharma,V., Tyagi,D., Shahi,A., Jangra,N., Malik,M., Sidhu,P.K., Malik,S., Ghalyan,Y., Sharma,S.S., Malik,A., Chuttani,R., Bamal,N., Bhadula,D., Batra,A., Temple,L. and Nehra,K. 2020-08-27 — GenBank