Protein

View in Explore
Genbank accession
APC46441.1 [GenBank]
Protein name
collagen triple helix repeat-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MTFTPIAPGTTNWDVPLNGALTTQDNSLASAQGDIAGLQSSVAALQTSVAALNGIVTGATFYRLVAASDASAEVKAKADYVCDGAGDQVEIQAAINAAQLEGGGAIQLSEGTFNIASPLVINGTLTETNPRTIILNGCGQYATMIVPTINVNGIALSDWAQCTISNLGIQINGSGSGIVATGVTSGTTRSFWNSSFTNIRVTGSYVTTNTGWGMNLEMPYRSTFDNIEIEGTRNGIKLVNTNSSTTSGYSSFERIRIDLVGTNGVGIHLRSDSGNLSRNTFNLMDMRAASTGCTGILVDGAANSRSHRFWAADIDQFSIAVAATSCESTVFDINYLAGDVNQAGNKGFVAGAASFNNVFSARKVLIGTADALSVFEDNGTTADSPNIFERIRIENSAGGTVTYSRQPHTVQRDIVTGNLGNPLPAGLLQYPTSGYNNPEFRASDHGLISWTTDTVTASNTSITQAGIPIYTKIKLTERVNLITNILVVITTAGATLTANQNFAGIYDSSGTRLGVTADQSGTWNSTGLKTMALTAPLTLGPGYYYIALLTNGTTQPTFLAAGATAQGVGINANLTVATARALSGPAGGVTSLPASVTLGSQVLTGAVRWSGLT
Physico‐chemical
properties
protein length:613 AA
molecular weight: 63481,02340 Da
isoelectric point:5,03960
aromaticity:0,06852
hydropathy:0,06411

Domains

Domains [InterPro]
IPR011050
64–404
IPR011050
IPR012334
76–361
IPR012334
APC46441.1
1 613
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptomyces phage BRock
[NCBI] 		1913591 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
APC46441.1 [NCBI]
Genbank nucleotide accession
KX925554 [NCBI]
CDS location
range 107303 -> 109144
strand -
CDS
ATGACATTTACTCCTATCGCTCCGGGCACAACCAACTGGGATGTCCCGTTGAACGGTGCTCTGACGACTCAGGACAACAGTCTTGCCTCTGCACAGGGTGACATTGCCGGTTTGCAGTCCTCTGTGGCCGCGCTACAGACGTCTGTGGCTGCTCTGAACGGGATTGTGACGGGTGCGACGTTCTATCGCCTCGTAGCGGCTTCTGACGCCTCTGCTGAGGTCAAGGCGAAGGCTGATTACGTCTGTGATGGTGCTGGTGACCAAGTGGAAATCCAGGCGGCTATCAATGCAGCCCAATTGGAGGGTGGAGGGGCTATTCAGCTCTCCGAGGGAACCTTCAATATCGCGTCTCCGTTGGTAATCAACGGTACTCTTACCGAGACCAATCCCAGAACAATCATTCTGAATGGTTGTGGTCAGTACGCGACGATGATTGTTCCTACTATTAATGTGAACGGTATTGCGCTGTCTGATTGGGCTCAATGCACGATTTCCAACCTGGGAATCCAGATCAACGGCTCTGGCTCTGGAATTGTGGCCACAGGGGTGACTTCCGGTACTACACGCTCATTCTGGAACTCTTCTTTCACGAATATCCGTGTTACAGGGTCCTACGTGACGACAAATACGGGTTGGGGTATGAATTTGGAGATGCCTTATCGTTCCACGTTCGACAATATCGAGATCGAGGGTACGCGTAACGGCATCAAGTTGGTGAATACCAACTCTTCCACTACTTCTGGTTACAGCAGTTTTGAGCGTATCCGTATCGATCTGGTGGGAACTAACGGTGTCGGCATTCATTTGCGTTCAGACAGCGGTAACCTGAGCCGTAACACGTTCAATCTGATGGATATGCGTGCCGCTAGCACCGGATGTACAGGTATTTTGGTGGATGGAGCGGCTAATTCTCGTTCTCACCGCTTCTGGGCAGCAGATATTGATCAATTCAGCATCGCTGTGGCGGCCACTTCGTGTGAAAGCACCGTTTTTGACATCAATTACCTTGCTGGAGACGTGAATCAGGCCGGAAACAAGGGATTTGTGGCGGGAGCAGCGTCTTTCAACAATGTTTTCTCTGCCAGAAAGGTCCTTATCGGTACTGCTGATGCTCTGTCTGTCTTTGAGGACAACGGAACTACTGCGGATTCTCCGAATATTTTCGAGAGAATTCGTATTGAGAACAGTGCGGGAGGTACGGTAACGTATTCTCGTCAGCCGCACACGGTGCAAAGAGACATCGTCACGGGCAATTTGGGTAATCCTCTTCCTGCGGGTCTGCTACAGTATCCGACAAGTGGTTACAACAATCCGGAGTTCCGTGCGTCGGATCATGGACTTATCTCCTGGACTACTGATACAGTGACTGCATCAAACACGAGCATCACTCAGGCAGGTATTCCGATCTACACGAAGATCAAGCTCACAGAACGTGTTAATCTGATCACGAATATCCTGGTAGTAATTACTACAGCAGGTGCTACACTGACTGCTAACCAAAACTTTGCGGGTATCTACGATTCTTCGGGTACTCGTTTGGGTGTTACTGCGGATCAGTCGGGTACCTGGAACTCCACAGGGCTTAAGACGATGGCTTTGACAGCACCTCTTACCCTTGGTCCCGGCTACTACTACATCGCCCTCTTGACAAACGGGACCACACAGCCTACATTCTTGGCAGCGGGTGCAACCGCACAGGGAGTTGGTATCAACGCCAACCTGACTGTTGCTACAGCACGTGCTTTGAGCGGTCCTGCGGGTGGCGTGACATCGCTTCCTGCGTCTGTTACACTGGGATCTCAGGTACTAACCGGAGCAGTTCGTTGGTCTGGCTTGACCTGA

Tertiary structure

PDB ID
75e8c7e999536a61b1186ea7dde4dfc7d24a8558745d0c5972959d92c3d0b9dd
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8424
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Streptomyces 5a phage BRock Crossman,A., Baron,S., Jamdagni,P., Khatri,P., Sharma,D., Pandey,M., Goyal,S., Kumar,S., Phogat,A., Chawla,G., Pasricha,M., Gupta,K., Bazzad,D., Aggarwal,V., Poughat,A., Singh,K., Rana,P., Gautam,R., Sharma,V., Tyagi,D., Shahi,A., Jangra,N., Malik,M., Sidhu,P.K., Malik,S., Ghalyan,Y., Sharma,S.S., Malik,A., Chuttani,R., Bamal,N., Bhadula,D., Batra,A., Temple,L. and Nehra,K. 2020-08-27 — GenBank