Protein

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UniProt accession
A0A4D6DVL1 [UniProt]
Protein name
Capsid and scaffold protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAFNYTPLTETQKLKDMYPKVNDIGNFLKTEVNLSDVKQISQPDFNNILASIPDSGNYYVTNSKGAPSGEATAGFVRLDKRNVNYYKIYYSPYSSNKMYIKTYANGTVYDWISFKLDEGSLYNEGNTLNVKELTESTTQYATLVNPPKENLNTGWVNYKESKNGVSSLVEFNPVNSTSTFKMIRKLPVQEQKPNLLKDSLFVYPETSYSNIKTDNWDTPPFWGYSSNSGRSGVRFRGENTVQIDDGSDTYPSVVSNRFKMGKELSVGDTVTVSVYAKINDPALLKDNLVYFELAGYDTVDDTSKNPYTGGRREITASEITTEWKKYSFTFTIPENTIGASGVKVNYVSLLLRMNCSSSKGNGAVVYYALPKLEKSSKVTPFITHENDVRKYDEIWSNWQEFISKDELKGHSPVDIEYNDYFKYQWWKSEVNEKSLKYLAMTVPQGYHTFYCQGSIAGTPKGRSIRGTIQVDYDKGDPYRANKFVKLLFTDTEGIPYTLYYGGYNQGWKPLKQSETSTLLWKGTLDFGSTEAVNLNDSLDNYDLIEVTYWTRSAGHFSTKRLDIKNTSNLLYIRDFNISNDSKGSSVDFFEGYCTFPTRTSVQPGMVKSITLDGSTNTTKVASWNEKERIQVYNIMGINRG
Physico‐chemical
properties
protein length:640 AA
molecular weight: 72655,23840 Da
isoelectric point:6,92921
aromaticity:0,13125
hydropathy:-0,61141

Domains

Domains [InterPro]
DC_0568
STR
5–407
DC_0568
cd19958
STR
44–111
cd19958 G3DSA:2.60.120.260 DC_0448
IPR003305
CBM
228–337
IPR003305
A0A4D6DVL1
1 640
Architecture
STR
STR 5-639 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A4D6DVL1
1 640
Domain Start End Length (AA) Confidence
N-terminal 1 293 293 0,6052
Central domain 294 505 213 0,2278
C-terminal 506 640 134 0,9703
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-293
Central
294-505
C-terminal
506-640

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage vBSM-A1
[NCBI] 		2557578 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus aureus
[NCBI] 		1280 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0016798 hydrolase activity, acting on glycosyl bonds Molecular Function IEA:InterPro (UniProt)

Tertiary structure

PDB ID
a3f486b7850ba1b0af7c5d980e069e66292e324913e621390a15f24d89280cff
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6975
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50