Protein

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Genbank accession
YP_007675503.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,82
Protein sequence
MSTIRIDELRALSDNNFKINLEGNDNLIIAGNIEMDSGASFSVPVGTTAQRPSSPVGGMLRYNTELGELEFYNGSNWATFIGAADGAAGGTTEGTAVTSVQGLYDAGLQQDGFYWLNFDGTAREYFVPLESHPYYILLGNWGGGASRFFGTQASALSGRELNTQGDVTPEGNFANNGTYGYYRNAGGSDFRYATMDRRGISYRYVKCKFNLYNYYSNDGINGRNFLGISSGVGDGLTIMRDNSGDGDGQHIFTYVTAISNQDGNSCPSTAGRYPSHRRQGNNPGGFMGDRFTCFSREGNSYTSEYVRNFTPFAGDSSGGTKPNVYNGDAWYTIDLGQNYAHNMHCVIHSDQDSGNEDTYLKRGVVLVRPA
Physico‐chemical
properties
protein length:370 AA
molecular weight: 40258,35540 Da
isoelectric point:4,99617
aromaticity:0,12703
hydropathy:-0,54784

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007675503.1
1 370
Domain Start End Length (AA) Confidence
N-terminal 1 49 49 0,5506
Central domain 50 248 200 0,0281
C-terminal 249 370 121 0,9931
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-49
Central
50-248
C-terminal
249-370

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-RIM2 R1_1999
[NCBI] 		869662 Uroviricota > Caudoviricetes > Pantevenvirales > Nerrivikvirus > Nerrivikvirus srim2
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007675503.1 [NCBI]
Genbank nucleotide accession
NC_020859 [NCBI]
CDS location
range 29693 -> 30805
strand +
CDS
ATGAGCACTATTAGAATAGACGAACTCAGAGCATTATCTGACAACAACTTCAAAATCAATCTTGAGGGTAATGATAACCTTATCATTGCTGGTAACATTGAGATGGATAGTGGCGCATCTTTCTCTGTTCCTGTAGGCACAACTGCACAGAGACCTAGTTCTCCTGTTGGTGGAATGTTGAGGTACAATACTGAACTTGGAGAACTAGAGTTTTATAATGGAAGTAACTGGGCAACTTTTATTGGTGCTGCCGATGGCGCAGCAGGAGGAACAACAGAGGGTACAGCAGTAACAAGTGTTCAGGGATTATATGATGCTGGTTTACAGCAAGATGGATTCTATTGGTTGAATTTTGATGGCACTGCAAGAGAATACTTTGTTCCATTAGAGTCACATCCATATTATATTTTGTTGGGTAACTGGGGCGGTGGTGCTTCTAGATTCTTTGGTACTCAAGCATCAGCACTTTCTGGTAGAGAACTTAACACTCAGGGAGATGTAACTCCTGAAGGTAACTTCGCCAACAATGGTACATATGGTTACTATCGAAATGCTGGCGGTAGTGATTTCAGATATGCAACGATGGATCGTAGAGGTATCTCTTATCGCTATGTTAAGTGTAAGTTTAACCTTTATAACTATTATTCAAATGATGGTATAAACGGTAGAAACTTCTTGGGTATTAGTAGCGGTGTTGGTGACGGTTTGACTATCATGAGAGATAACTCTGGTGATGGTGATGGTCAACATATTTTCACTTATGTCACTGCCATAAGTAATCAGGATGGCAACAGTTGCCCGAGTACAGCAGGGCGTTATCCCTCACATAGAAGACAGGGTAACAATCCTGGTGGATTTATGGGTGACCGATTTACTTGTTTCTCAAGAGAAGGTAATAGTTATACCAGTGAGTATGTAAGAAACTTTACTCCTTTTGCTGGAGATAGTTCTGGTGGAACTAAACCAAATGTATATAATGGTGACGCATGGTACACAATCGACCTGGGTCAAAACTACGCACATAATATGCATTGTGTGATTCATTCCGATCAAGATAGTGGAAACGAAGATACATACTTGAAGAGAGGAGTAGTCTTAGTACGTCCTGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b10b1576564c7ff6b9defc83ff56e535e886b0f23957fc3db0b13af9760c2c08
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4794
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Synechococcus phage S-RIM2 isolate R1_1999 Henn,M.R., Marston,M., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank