Protein

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Genbank accession
AFH20527.1 [GenBank]
Protein name
bacteriophage host specificity protein
RBP type
TSP
Evidence RBPdetect
Probability 0,87
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MTIVYDVTGHKGGGGKQHTPQETPDSLHSLAKIRILLALGEGEFEGIPDPNELRQRVYLDGTPIQNADRSENFPGARVEFRPGTQHQDVIHGFSAVESEQTVGVKLEYGTPWVRQINDTSLDAVRIRIGIPALYTNEDNGDLVGGRIDYKIVVYTDNADPREFRFAAVGKTMSLYERDHRIELPPNVNTGWRVEVHRITADSTSAKVVNDIRVQSITEIIDARLRYPLTALLFVEFDAKAFQNIPRVSIKCKGRKVLIPNNYDPINHTYSGDWDGTFKRAWTDNPAWHWYDICITERFGLGRRIKPQMLNRYALYQIAQRCDQLVSDGNGGREIRFKNDMYIQSQTDAWTVLKDLAAIFAGMTWWGNQMLNIVSDQPVAAVSHTITNASVIDGRFDYASGSQKTRYSTFAVAYGNPKNHYDDAIATGQRVELVRRHKINRLDITAIGCTRESEAQRRGHWALISNQLDQQVSFKVGMEGLFFIPGSVVAIADTNISGGFETRGGRLLSDPGTRIVLNTDSEITFRPGDKFLVRTDSGNVETREIASVNGNKVTLKTALDADPIPDQPFCVDGNDIQLQKFRITDLEYDDSTSTFSVRGIEYNDSKYDAVDNGARLDPGIFTQVPDGVMKGPESVTITPSQISTQGQLITNVDIVFPPVKDAVVYEIQWRRTSLQNMEIQWGNDWVNIPRTASNGAHIHNVFSGNYQARVRAIGMGEISSPWVSSEITPVEGRLGGLNAPIITNAISGLHQILWKWNHNNAATDISYTELEVRKTGETEWKFLSNVPYPGAEYAQTSLEFGIYQQLRARVADKIGNLSDWSAPFEGQVSDKVDEYMKGLDDEFLTSEDGKHFQEAINTIPQGIYEAMLTDAQQLFNARAEYKGIYAEIKVAYNVAADAHQAVAQLETLIGSRLDDAEASIHTLQTAQSTHEQAFAQYQQTVAAKFADQEAAIQSVQTATADVAGALAEYKTQVAAQFGQQSAAIEQKMTSSFNHSGGSATYSLKAGVTYNGTYYDAGMQLSVVASGSAVKSRIAFKADQFYIMHPSNGSLSSAFIVDGGQVYIDTARIKDASINFAQITDTLQSNNFASGSRGWRIQKGGAAEFNEVTVRGRLYADSGDFAFNGINNTVQINGNGVTVNLPGGGRVVLGTF
Physico‐chemical
properties
protein length:1150 AA
molecular weight: 127007,17870 Da
isoelectric point:5,41007
aromaticity:0,09217
hydropathy:-0,36461

Domains

Domains [InterPro]
DC_0014
STR
1–1150
DC_0014
IPR053171
Unmapped
7–857
IPR053171 IPR015406
IPR055385
ATT
96–222
IPR055385 IPR032876
AFH20527.1
1 1150
Architecture
STR
ATT
STR
ATT
STR
STR 1-95 | ATT 96-222 | STR 223-343 | ATT 344-495 | STR 496-1150
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFH20527.1
1 1150
Domain Start End Length (AA) Confidence
N-terminal 1 509 509 0,9139
Central domain 510 1081 573 0,0357
C-terminal 1082 1150 68 0,8216
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-509
Central
510-1081
C-terminal
1082-1150

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage HK578
[NCBI] 		1147142 Uroviricota > Caudoviricetes > Dhillonvirus >
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFH20527.1 [NCBI]
Genbank nucleotide accession
JQ086375 [NCBI]
CDS location
range 16913 -> 20365
strand +
CDS
ATGACGATTGTCTACGACGTCACAGGCCATAAAGGCGGCGGTGGCAAACAGCACACCCCACAGGAGACACCAGATAGCCTGCATTCGCTGGCTAAAATCCGCATCTTGCTCGCACTGGGTGAAGGTGAGTTCGAAGGCATTCCCGACCCCAACGAATTACGGCAGCGCGTTTATTTGGACGGCACACCGATCCAGAACGCCGACCGATCCGAAAACTTCCCCGGCGCGCGCGTGGAGTTCCGCCCCGGCACACAGCACCAGGACGTGATTCACGGATTTTCCGCGGTGGAAAGCGAGCAAACCGTAGGCGTAAAACTGGAATACGGCACGCCGTGGGTGCGCCAGATTAACGACACCAGTCTTGACGCCGTGCGCATTCGCATCGGCATTCCAGCCCTGTACACTAACGAAGATAATGGCGACCTGGTGGGCGGGCGCATCGACTATAAGATAGTTGTGTATACGGATAACGCCGACCCGCGTGAGTTCAGATTCGCCGCCGTTGGTAAAACAATGTCGCTATATGAGCGCGATCACCGCATCGAGCTACCGCCGAACGTTAACACCGGCTGGCGCGTGGAGGTGCACCGCATAACGGCAGACTCCACATCGGCGAAAGTGGTTAATGATATCCGGGTGCAGTCCATCACTGAGATTATCGACGCCCGCCTGCGTTACCCGCTAACCGCGCTGTTGTTCGTGGAGTTCGACGCCAAAGCGTTCCAGAACATCCCGCGCGTGTCCATCAAGTGCAAAGGCCGCAAAGTTCTAATACCGAACAACTACGACCCGATTAATCATACCTATTCCGGGGACTGGGATGGTACGTTTAAACGCGCCTGGACGGATAACCCTGCGTGGCACTGGTACGACATTTGTATTACTGAGCGCTTCGGCCTCGGTCGGCGTATCAAACCGCAAATGCTAAATCGATACGCGCTCTACCAGATTGCGCAGCGCTGCGATCAGTTGGTCAGCGACGGCAACGGTGGTCGCGAAATCCGCTTTAAGAATGATATGTACATTCAGTCACAGACGGATGCCTGGACCGTGCTTAAGGATTTGGCTGCCATCTTCGCCGGAATGACCTGGTGGGGCAACCAGATGTTGAATATCGTCAGTGACCAACCGGTAGCCGCGGTGTCCCACACTATTACCAACGCATCTGTTATTGATGGGCGATTCGACTACGCATCTGGCAGCCAGAAAACTCGCTATTCCACATTCGCGGTAGCATACGGCAATCCGAAAAACCACTATGATGACGCCATCGCAACGGGCCAGCGCGTCGAACTGGTGCGCCGCCATAAGATTAACCGTCTCGATATTACGGCGATCGGCTGTACGCGCGAATCCGAAGCGCAACGCCGGGGGCACTGGGCGCTAATCTCAAACCAGCTTGACCAGCAAGTTAGTTTTAAGGTGGGCATGGAGGGGTTGTTCTTTATCCCTGGTAGCGTAGTTGCGATCGCAGATACTAATATTTCTGGCGGATTCGAGACTCGGGGTGGGCGTCTATTGTCGGACCCCGGCACGCGTATCGTGCTGAACACAGACAGCGAAATCACATTCCGCCCCGGCGATAAGTTCCTGGTCCGCACAGATAGCGGAAATGTTGAGACTCGCGAGATCGCCAGCGTCAACGGTAACAAGGTAACGCTAAAAACCGCACTGGATGCCGACCCGATCCCCGATCAGCCGTTTTGCGTTGACGGGAATGATATCCAGTTGCAAAAATTCCGCATCACCGATCTGGAATATGACGACTCTACGAGCACTTTCTCGGTGCGCGGGATTGAATATAACGATAGCAAATATGATGCCGTTGATAATGGCGCGCGCCTAGACCCGGGCATCTTTACGCAAGTGCCGGACGGTGTAATGAAGGGGCCAGAATCCGTGACCATAACCCCGTCGCAGATTTCAACGCAAGGCCAGCTAATCACCAACGTGGATATTGTATTCCCTCCGGTGAAGGATGCCGTGGTGTATGAAATCCAGTGGCGACGTACCAGCTTGCAGAATATGGAAATCCAGTGGGGAAACGACTGGGTGAACATCCCACGCACGGCATCAAACGGTGCGCACATCCATAACGTGTTTTCCGGTAACTATCAGGCACGCGTCCGCGCGATCGGTATGGGGGAGATTTCATCCCCGTGGGTGTCTTCCGAGATCACGCCGGTGGAAGGTCGCCTCGGCGGGCTTAACGCACCTATCATCACCAACGCGATTTCTGGCCTTCACCAGATTTTGTGGAAGTGGAACCACAACAACGCCGCGACGGATATTTCATACACCGAGCTTGAAGTGCGCAAGACGGGCGAGACGGAATGGAAATTCCTGTCCAACGTCCCATATCCTGGCGCGGAGTACGCGCAAACGTCGCTGGAGTTCGGCATATACCAGCAGTTGCGCGCCCGTGTAGCGGATAAAATCGGCAACCTGTCGGACTGGTCAGCCCCGTTCGAAGGCCAAGTGAGTGACAAAGTTGACGAGTACATGAAGGGACTTGATGACGAGTTCTTGACTTCCGAGGATGGTAAACACTTCCAGGAAGCTATTAACACGATCCCGCAAGGCATTTACGAGGCGATGCTCACTGACGCGCAGCAATTATTTAACGCCCGTGCCGAGTACAAAGGGATTTACGCAGAAATCAAGGTGGCTTATAACGTAGCCGCGGATGCCCACCAGGCAGTAGCACAACTGGAGACGTTGATCGGCTCGCGCCTTGATGACGCGGAAGCATCAATCCACACGTTGCAGACCGCGCAAAGCACGCATGAACAAGCGTTCGCCCAGTACCAGCAAACTGTTGCCGCTAAGTTCGCCGATCAGGAAGCCGCCATCCAGTCAGTGCAAACGGCAACGGCGGATGTAGCTGGCGCGCTGGCGGAGTACAAGACCCAGGTCGCGGCACAGTTCGGTCAGCAGTCCGCCGCAATCGAGCAGAAGATGACGTCTTCGTTTAACCACTCTGGTGGTAGCGCCACATACAGCCTGAAGGCTGGCGTGACGTATAACGGGACTTACTACGATGCGGGTATGCAGCTTTCCGTAGTGGCGTCGGGCAGCGCGGTTAAATCGCGTATCGCGTTCAAGGCGGACCAGTTCTACATAATGCATCCGTCTAATGGGTCGCTTTCGTCGGCGTTCATTGTTGACGGTGGGCAGGTGTATATTGACACGGCACGCATCAAGGATGCGTCAATCAACTTCGCACAGATCACGGACACGCTGCAATCAAACAACTTCGCTTCCGGGTCGCGCGGATGGCGCATCCAGAAGGGCGGCGCTGCGGAGTTTAACGAAGTAACGGTCCGCGGCAGGCTGTACGCTGATAGTGGTGATTTTGCTTTTAACGGAATAAACAACACCGTGCAAATTAACGGGAATGGGGTGACGGTTAACCTGCCTGGAGGAGGGAGGGTTGTATTAGGTACATTCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
09e1b449047f76ec83b68bfcda8e6d94b7ab9723bfb81eea1de5005be4340827
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2922
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The genomes of several lambdoid coliphages Refardt,D., Gencoglu,M., Kunzli-Gontarczyk,M., Bruggmann,R. and Kropinski,A.M. 2012-04 — GenBank