Protein

View in Explore
Genbank accession
AFH20527.1 [GenBank]
Protein name
bacteriophage host specificity protein
RBP type
TSP
Evidence RBPdetect
Probability 0,87
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MTIVYDVTGHKGGGGKQHTPQETPDSLHSLAKIRILLALGEGEFEGIPDPNELRQRVYLDGTPIQNADRSENFPGARVEFRPGTQHQDVIHGFSAVESEQTVGVKLEYGTPWVRQINDTSLDAVRIRIGIPALYTNEDNGDLVGGRIDYKIVVYTDNADPREFRFAAVGKTMSLYERDHRIELPPNVNTGWRVEVHRITADSTSAKVVNDIRVQSITEIIDARLRYPLTALLFVEFDAKAFQNIPRVSIKCKGRKVLIPNNYDPINHTYSGDWDGTFKRAWTDNPAWHWYDICITERFGLGRRIKPQMLNRYALYQIAQRCDQLVSDGNGGREIRFKNDMYIQSQTDAWTVLKDLAAIFAGMTWWGNQMLNIVSDQPVAAVSHTITNASVIDGRFDYASGSQKTRYSTFAVAYGNPKNHYDDAIATGQRVELVRRHKINRLDITAIGCTRESEAQRRGHWALISNQLDQQVSFKVGMEGLFFIPGSVVAIADTNISGGFETRGGRLLSDPGTRIVLNTDSEITFRPGDKFLVRTDSGNVETREIASVNGNKVTLKTALDADPIPDQPFCVDGNDIQLQKFRITDLEYDDSTSTFSVRGIEYNDSKYDAVDNGARLDPGIFTQVPDGVMKGPESVTITPSQISTQGQLITNVDIVFPPVKDAVVYEIQWRRTSLQNMEIQWGNDWVNIPRTASNGAHIHNVFSGNYQARVRAIGMGEISSPWVSSEITPVEGRLGGLNAPIITNAISGLHQILWKWNHNNAATDISYTELEVRKTGETEWKFLSNVPYPGAEYAQTSLEFGIYQQLRARVADKIGNLSDWSAPFEGQVSDKVDEYMKGLDDEFLTSEDGKHFQEAINTIPQGIYEAMLTDAQQLFNARAEYKGIYAEIKVAYNVAADAHQAVAQLETLIGSRLDDAEASIHTLQTAQSTHEQAFAQYQQTVAAKFADQEAAIQSVQTATADVAGALAEYKTQVAAQFGQQSAAIEQKMTSSFNHSGGSATYSLKAGVTYNGTYYDAGMQLSVVASGSAVKSRIAFKADQFYIMHPSNGSLSSAFIVDGGQVYIDTARIKDASINFAQITDTLQSNNFASGSRGWRIQKGGAAEFNEVTVRGRLYADSGDFAFNGINNTVQINGNGVTVNLPGGGRVVLGTF
Physico‐chemical
properties
protein length:1150 AA
molecular weight: 127007,17870 Da
isoelectric point:5,41007
aromaticity:0,09217
hydropathy:-0,36461

Domains

Domains [InterPro]
IPR053171
7–857
IPR053171 IPR015406
IPR055385
96–222
IPR055385 IPR032876
AFH20527.1
1 1150
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage HK578
[NCBI] 		1147142 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Escherichia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFH20527.1 [NCBI]
Genbank nucleotide accession
JQ086375 [NCBI]
CDS location
range 16913 -> 20365
strand +
CDS
ATGACGATTGTCTACGACGTCACAGGCCATAAAGGCGGCGGTGGCAAACAGCACACCCCACAGGAGACACCAGATAGCCTGCATTCGCTGGCTAAAATCCGCATCTTGCTCGCACTGGGTGAAGGTGAGTTCGAAGGCATTCCCGACCCCAACGAATTACGGCAGCGCGTTTATTTGGACGGCACACCGATCCAGAACGCCGACCGATCCGAAAACTTCCCCGGCGCGCGCGTGGAGTTCCGCCCCGGCACACAGCACCAGGACGTGATTCACGGATTTTCCGCGGTGGAAAGCGAGCAAACCGTAGGCGTAAAACTGGAATACGGCACGCCGTGGGTGCGCCAGATTAACGACACCAGTCTTGACGCCGTGCGCATTCGCATCGGCATTCCAGCCCTGTACACTAACGAAGATAATGGCGACCTGGTGGGCGGGCGCATCGACTATAAGATAGTTGTGTATACGGATAACGCCGACCCGCGTGAGTTCAGATTCGCCGCCGTTGGTAAAACAATGTCGCTATATGAGCGCGATCACCGCATCGAGCTACCGCCGAACGTTAACACCGGCTGGCGCGTGGAGGTGCACCGCATAACGGCAGACTCCACATCGGCGAAAGTGGTTAATGATATCCGGGTGCAGTCCATCACTGAGATTATCGACGCCCGCCTGCGTTACCCGCTAACCGCGCTGTTGTTCGTGGAGTTCGACGCCAAAGCGTTCCAGAACATCCCGCGCGTGTCCATCAAGTGCAAAGGCCGCAAAGTTCTAATACCGAACAACTACGACCCGATTAATCATACCTATTCCGGGGACTGGGATGGTACGTTTAAACGCGCCTGGACGGATAACCCTGCGTGGCACTGGTACGACATTTGTATTACTGAGCGCTTCGGCCTCGGTCGGCGTATCAAACCGCAAATGCTAAATCGATACGCGCTCTACCAGATTGCGCAGCGCTGCGATCAGTTGGTCAGCGACGGCAACGGTGGTCGCGAAATCCGCTTTAAGAATGATATGTACATTCAGTCACAGACGGATGCCTGGACCGTGCTTAAGGATTTGGCTGCCATCTTCGCCGGAATGACCTGGTGGGGCAACCAGATGTTGAATATCGTCAGTGACCAACCGGTAGCCGCGGTGTCCCACACTATTACCAACGCATCTGTTATTGATGGGCGATTCGACTACGCATCTGGCAGCCAGAAAACTCGCTATTCCACATTCGCGGTAGCATACGGCAATCCGAAAAACCACTATGATGACGCCATCGCAACGGGCCAGCGCGTCGAACTGGTGCGCCGCCATAAGATTAACCGTCTCGATATTACGGCGATCGGCTGTACGCGCGAATCCGAAGCGCAACGCCGGGGGCACTGGGCGCTAATCTCAAACCAGCTTGACCAGCAAGTTAGTTTTAAGGTGGGCATGGAGGGGTTGTTCTTTATCCCTGGTAGCGTAGTTGCGATCGCAGATACTAATATTTCTGGCGGATTCGAGACTCGGGGTGGGCGTCTATTGTCGGACCCCGGCACGCGTATCGTGCTGAACACAGACAGCGAAATCACATTCCGCCCCGGCGATAAGTTCCTGGTCCGCACAGATAGCGGAAATGTTGAGACTCGCGAGATCGCCAGCGTCAACGGTAACAAGGTAACGCTAAAAACCGCACTGGATGCCGACCCGATCCCCGATCAGCCGTTTTGCGTTGACGGGAATGATATCCAGTTGCAAAAATTCCGCATCACCGATCTGGAATATGACGACTCTACGAGCACTTTCTCGGTGCGCGGGATTGAATATAACGATAGCAAATATGATGCCGTTGATAATGGCGCGCGCCTAGACCCGGGCATCTTTACGCAAGTGCCGGACGGTGTAATGAAGGGGCCAGAATCCGTGACCATAACCCCGTCGCAGATTTCAACGCAAGGCCAGCTAATCACCAACGTGGATATTGTATTCCCTCCGGTGAAGGATGCCGTGGTGTATGAAATCCAGTGGCGACGTACCAGCTTGCAGAATATGGAAATCCAGTGGGGAAACGACTGGGTGAACATCCCACGCACGGCATCAAACGGTGCGCACATCCATAACGTGTTTTCCGGTAACTATCAGGCACGCGTCCGCGCGATCGGTATGGGGGAGATTTCATCCCCGTGGGTGTCTTCCGAGATCACGCCGGTGGAAGGTCGCCTCGGCGGGCTTAACGCACCTATCATCACCAACGCGATTTCTGGCCTTCACCAGATTTTGTGGAAGTGGAACCACAACAACGCCGCGACGGATATTTCATACACCGAGCTTGAAGTGCGCAAGACGGGCGAGACGGAATGGAAATTCCTGTCCAACGTCCCATATCCTGGCGCGGAGTACGCGCAAACGTCGCTGGAGTTCGGCATATACCAGCAGTTGCGCGCCCGTGTAGCGGATAAAATCGGCAACCTGTCGGACTGGTCAGCCCCGTTCGAAGGCCAAGTGAGTGACAAAGTTGACGAGTACATGAAGGGACTTGATGACGAGTTCTTGACTTCCGAGGATGGTAAACACTTCCAGGAAGCTATTAACACGATCCCGCAAGGCATTTACGAGGCGATGCTCACTGACGCGCAGCAATTATTTAACGCCCGTGCCGAGTACAAAGGGATTTACGCAGAAATCAAGGTGGCTTATAACGTAGCCGCGGATGCCCACCAGGCAGTAGCACAACTGGAGACGTTGATCGGCTCGCGCCTTGATGACGCGGAAGCATCAATCCACACGTTGCAGACCGCGCAAAGCACGCATGAACAAGCGTTCGCCCAGTACCAGCAAACTGTTGCCGCTAAGTTCGCCGATCAGGAAGCCGCCATCCAGTCAGTGCAAACGGCAACGGCGGATGTAGCTGGCGCGCTGGCGGAGTACAAGACCCAGGTCGCGGCACAGTTCGGTCAGCAGTCCGCCGCAATCGAGCAGAAGATGACGTCTTCGTTTAACCACTCTGGTGGTAGCGCCACATACAGCCTGAAGGCTGGCGTGACGTATAACGGGACTTACTACGATGCGGGTATGCAGCTTTCCGTAGTGGCGTCGGGCAGCGCGGTTAAATCGCGTATCGCGTTCAAGGCGGACCAGTTCTACATAATGCATCCGTCTAATGGGTCGCTTTCGTCGGCGTTCATTGTTGACGGTGGGCAGGTGTATATTGACACGGCACGCATCAAGGATGCGTCAATCAACTTCGCACAGATCACGGACACGCTGCAATCAAACAACTTCGCTTCCGGGTCGCGCGGATGGCGCATCCAGAAGGGCGGCGCTGCGGAGTTTAACGAAGTAACGGTCCGCGGCAGGCTGTACGCTGATAGTGGTGATTTTGCTTTTAACGGAATAAACAACACCGTGCAAATTAACGGGAATGGGGTGACGGTTAACCTGCCTGGAGGAGGGAGGGTTGTATTAGGTACATTCTGA

Tertiary structure

PDB ID
09e1b449047f76ec83b68bfcda8e6d94b7ab9723bfb81eea1de5005be4340827
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2390
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The genomes of several lambdoid coliphages Refardt,D., Gencoglu,M., Kunzli-Gontarczyk,M., Bruggmann,R. and Kropinski,A.M. 2012-04 — GenBank