Protein

View in Explore
Genbank accession
XCD07544.1 [GenBank]
Protein name
minor structural protein
RBP type
TF
Evidence RBPdetect2
Probability 0,77
Protein sequence
MYINTSESFNDSIGKFGGRTFRARLVSDEYTIEDEIKKISYIGGSNGDDEITVGSSTSAYAEVTIQKINRVLAGTEFRFEIGIMTEDGIEYCPMGLFTAEKPTEEGNESKFKAYDRMAQLELPYASKLQYPCTTIEIMEEISEITGYPFATNLEPITLNNPNTGEESSNTVMAGYTLRETVGYISGLYGKFAVFNRSGELEFHWYEDSEYILPAKKCWKLKRGETDFSIDKIVGISPSDEQFTSGSGESGFYYSNPFINQDILDEIYNSIGGFSYRSAEIKFLGDCRIEPWEIISVQDITGNVYKVPAMQIKHNLDGGLATTIIAKAKESEGESDKYKGPITKAMERTHAELLIVNFLLAQKASFDYVEANYIQTKELAAISAYIETAVLNSVRAEFATIKQLDAESARIDDLETNSLTASSAIIQELLSGVADINTLIFGSATGTTIQTEFANAVIAQLGNAQIKSAMIKEVAANKITGLDINTSKLTVHSEDGKSIWSDNTIQISDGTRIRVQIGKDASNDYSINIWDEEGKLMFSEGGITDNAIKTAIIRNEMVSENANISASKLDIESLFDEINNDGSHTLNSSKIYLDSEGQTLDISFLKIKSDTEGVEGELSEVKETITTQGTQISAIQGQISSKVWQQDIATATENIKIGGTQILRGTNSADELTGTSNAAWNKGAWRAASSGNGERTSITISDSPNANIKRGWSLTRTSGALDIAQDNIPVSLGQLYTISCYARWVNGTPKLRFQSYAASETAHFQSYDITEEEKEWKQYSFVFTHDFTESPSRVSIYFGNSGDGTIEICGMKLETGNKATDWTPSPEDLDGDITSLNTKYSEINQSVDRITATVGEHTTELNGLETRVTYAEASIEVTAEEISTKVSKDGVISAINQSAEEIEIQANKINLNGVVTANESFKINEDGSMEAIAGELGGWKIEGDSISKTVQMFVYPSEEDIDNIKELMISGDWTEEQLAWYDYDSSGDLDILDINHIRRMLLGIETVEELVYKYGYIKPLFDVKISLSATDYQRTLKMESFAYGRQVVRYYGISDMETSRAKFGGVNTRELFSQNAEITELTCGSLKVEGDQDIFSLNNSSYDFDMSKYSGHVYDIVVYGDYGCAYASVIRSPATLSVAINGNSWTGAGSIKLQQTGSAIISFVYSGTYSMSFYSKIVEKY
Physico‐chemical
properties
protein length:1180 AA
molecular weight: 130104,03390 Da
isoelectric point:4,53651
aromaticity:0,09322
hydropathy:-0,32788

Domains

Domains [InterPro]
G3DSA:2.60.120.260
669–815
G3DSA:2.60.120.260
IPR008979
720–810
IPR008979
IPR003305
723–797
IPR003305
XCD07544.1
1 1180
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Dulem virus 39
[NCBI] 		3145757 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XCD07544.1 [NCBI]
Genbank nucleotide accession
PP511791 [NCBI]
CDS location
range 14921 -> 18463
strand +
CDS
ATGTATATAAACACATCAGAATCGTTTAACGATTCAATTGGAAAGTTCGGTGGCAGAACTTTTCGTGCAAGACTCGTCTCGGATGAATATACGATTGAGGATGAGATTAAAAAGATCAGTTATATCGGTGGTTCAAATGGAGACGACGAAATAACGGTAGGGTCATCAACATCAGCATATGCAGAAGTGACTATCCAAAAGATAAATCGGGTATTAGCTGGAACAGAATTCCGATTTGAAATTGGAATTATGACGGAAGATGGAATTGAATACTGTCCTATGGGGCTTTTTACAGCAGAAAAACCAACCGAAGAAGGAAATGAATCAAAATTTAAGGCATATGATAGAATGGCACAACTGGAGCTTCCGTATGCGTCAAAACTGCAATACCCATGTACCACTATCGAAATAATGGAAGAAATTTCCGAAATTACTGGCTATCCTTTTGCGACAAATTTAGAGCCGATTACGCTAAATAATCCAAATACCGGAGAAGAATCAAGCAATACAGTAATGGCAGGATATACCTTGCGTGAGACTGTTGGATATATTTCTGGACTTTATGGTAAATTTGCAGTGTTTAACAGATCGGGAGAATTGGAGTTTCATTGGTATGAGGATTCTGAATATATTCTGCCCGCAAAAAAGTGTTGGAAATTAAAAAGGGGAGAAACCGACTTCAGCATTGATAAAATTGTTGGTATATCTCCAAGCGATGAACAATTTACTTCTGGAAGCGGAGAAAGCGGATTTTATTATAGCAATCCTTTTATAAATCAGGATATTTTAGATGAAATTTATAATAGCATAGGGGGATTTTCTTACCGTTCAGCAGAAATAAAATTTTTAGGGGATTGTCGAATAGAGCCTTGGGAAATTATCAGCGTACAAGATATAACTGGAAATGTATATAAGGTTCCGGCAATGCAGATAAAGCATAATCTTGATGGGGGTCTTGCAACTACGATAATCGCAAAGGCAAAAGAGTCGGAGGGAGAAAGCGATAAGTACAAGGGTCCTATTACAAAGGCTATGGAACGAACTCATGCGGAACTCCTGATTGTAAATTTTCTGCTGGCTCAGAAAGCCAGTTTTGACTATGTGGAAGCGAATTATATACAGACGAAGGAATTAGCCGCAATATCAGCGTACATTGAAACCGCGGTACTTAATAGTGTTCGGGCAGAATTCGCCACGATAAAGCAGTTAGACGCAGAATCGGCGAGAATAGATGACCTTGAAACGAATTCCCTGACTGCAAGCAGCGCAATTATACAGGAACTGCTCTCAGGTGTCGCAGATATCAATACGCTTATCTTTGGTTCCGCTACCGGAACCACAATACAGACCGAATTTGCAAACGCTGTTATTGCACAGTTGGGGAATGCACAGATAAAATCCGCAATGATCAAAGAAGTCGCCGCGAACAAAATAACTGGGCTTGATATTAACACAAGCAAACTTACAGTACATAGCGAAGACGGAAAATCCATATGGAGCGATAATACCATACAGATTAGTGACGGAACGCGTATTCGAGTGCAAATTGGTAAGGATGCAAGTAACGACTATTCAATCAATATTTGGGACGAAGAAGGAAAATTAATGTTCTCGGAAGGTGGAATTACTGACAATGCAATAAAAACAGCAATTATCAGGAATGAAATGGTGTCTGAGAACGCTAATATAAGCGCTAGCAAGTTAGATATCGAAAGTTTATTTGACGAAATAAACAACGACGGGAGCCACACTCTTAATTCAAGTAAAATTTATTTGGATTCCGAGGGGCAGACTTTGGATATATCATTTTTGAAAATAAAATCTGATACAGAAGGAGTAGAAGGGGAATTATCAGAAGTAAAAGAAACAATAACAACTCAAGGGACACAGATTAGCGCAATTCAAGGGCAGATATCATCAAAGGTGTGGCAACAAGATATTGCTACGGCAACAGAAAATATAAAAATTGGTGGTACGCAAATTTTACGAGGAACAAATTCTGCGGATGAGTTGACTGGAACAAGTAATGCAGCATGGAACAAAGGGGCATGGAGGGCAGCATCAAGCGGAAACGGAGAACGTACTTCGATAACCATTAGTGACAGCCCAAATGCCAATATTAAAAGAGGCTGGAGCCTTACAAGAACATCTGGTGCATTGGATATTGCACAGGATAATATCCCAGTGTCACTAGGACAGTTATATACCATAAGTTGTTATGCCAGATGGGTAAACGGGACACCAAAACTACGCTTTCAATCTTATGCGGCATCAGAGACAGCTCATTTTCAATCATACGATATTACAGAGGAAGAAAAAGAATGGAAACAATATTCATTCGTTTTTACTCACGATTTTACAGAATCACCAAGTCGCGTAAGCATATATTTCGGGAATAGCGGTGACGGTACGATCGAAATTTGCGGAATGAAATTAGAGACAGGAAACAAGGCAACTGATTGGACACCGTCGCCAGAGGATTTAGACGGAGATATAACCTCATTGAATACAAAATATAGCGAAATCAACCAAAGCGTAGATAGAATTACTGCGACTGTAGGAGAGCATACCACGGAATTAAACGGATTAGAAACAAGAGTCACATATGCTGAAGCAAGTATTGAGGTAACGGCAGAGGAGATATCGACGAAGGTATCGAAAGATGGCGTCATCTCAGCGATCAACCAAAGTGCCGAAGAAATAGAAATACAAGCGAATAAAATTAACTTAAACGGAGTAGTTACCGCAAATGAAAGCTTTAAGATAAACGAGGACGGTAGCATGGAAGCAATTGCCGGAGAACTAGGAGGATGGAAAATAGAAGGGGACTCTATATCTAAGACGGTTCAGATGTTTGTGTACCCGTCAGAAGAAGATATAGATAACATAAAGGAACTGATGATTTCTGGGGATTGGACAGAAGAACAGCTTGCATGGTATGATTATGACTCAAGCGGTGATCTTGATATACTTGATATTAATCATATAAGACGTATGCTTCTCGGAATCGAAACCGTTGAGGAATTAGTTTATAAATACGGGTATATAAAACCTTTGTTTGATGTAAAAATATCTTTATCAGCAACTGATTATCAGAGAACTCTAAAAATGGAATCATTTGCTTATGGGAGACAAGTAGTAAGATACTATGGAATATCTGATATGGAAACATCTAGAGCAAAGTTTGGAGGAGTAAACACAAGAGAATTATTCTCCCAAAATGCAGAAATTACGGAATTGACATGCGGATCGTTAAAAGTAGAGGGAGATCAAGACATCTTTTCCTTGAACAATTCTTCGTATGATTTTGACATGTCAAAATATTCTGGACACGTTTATGATATTGTGGTGTATGGGGATTATGGATGCGCTTACGCATCGGTAATTCGATCTCCAGCGACCTTATCCGTTGCAATAAATGGAAATTCTTGGACTGGAGCGGGTTCGATAAAATTACAGCAGACTGGCAGCGCAATAATCTCATTTGTTTATAGTGGTACTTATTCAATGAGTTTTTATTCTAAAATTGTAGAAAAATATTAA

Tertiary structure

PDB ID
bf7664e33879aadbf6125456756cdc5b2aac49974b7a5532c4a766ad4ee4e319
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2390
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Diverse circular DNA viruses in blood, oral, and fecal samples of captive lemurs Paietta,E.N., Kraberger,S., Lund,M.C., Custer,J.M., Vargas,K.M., Ehmke,E.E., Yoder,A.D. and Varsani,A. 2024-07-08 — GenBank