Protein

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Genbank accession
AUR86011.1 [GenBank]
Protein name
6-phosphogluconate dehydrogenase
RBP type
TSP
Evidence RBPdetect
Probability 0,85
Protein sequence
MSSIDLPGGNPVLPDYILEAPIDAILYGRINASWLEIPIQLDAPADGASYLRKDNTWVENIPGDSTIPPLPLDFKVYGISNGMWTAVTEEAPEDGESYVRRDTDWVVFPQSDWDVTDITQPSFIKNKPAIAQSDWDITDSLSPAYILNKPDPVLDISRDRSQLVSDYSADQTRIAVTDYTNVSTVTGNDPVVNVDPESTLLITTDVTGTITIGDVSNARVFNGDVFGIDNTQNTVDVALSVTNPAFQFSDGSQLFTVRDGELVNFFVFTIGVDNVIFPVSNYQYHTTEAILDDYLITIPTNVSSSIDYQISPTNLFTQTIAQSGTYRLAATIYWLIDETNRFYHSAMKLNGIDIGQEVKHEVKDRANVQNSSYLHRLDLVAGDVISFDYGPSGSDATVTIYAGSQVEIYRI
Physico‐chemical
properties
protein length:411 AA
molecular weight: 45345,66110 Da
isoelectric point:4,07214
aromaticity:0,09976
hydropathy:-0,14866

Domains

Domains [InterPro]
G3DSA:6.20.230.10
ATT
41–60
G3DSA:6.20.230.10 G3DSA:6.20.230.10
G3DSA:6.20.230.10
ATT
87–105
G3DSA:6.20.230.10
AUR86011.1
1 411
Architecture
ATT
ATT
ATT 41-60 | ATT 87-108 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUR86011.1
1 411
Domain Start End Length (AA) Confidence
N-terminal 1 170 170 0,9921
Central domain 171 369 200 0,0802
C-terminal 370 411 41 0,9975
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-170
Central
171-369
C-terminal
370-411

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.081.O._10N.286.52.C2
[NCBI] 		2070722 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shewanella
[NCBI] 		22 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Alteromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUR86011.1 [NCBI]
Genbank nucleotide accession
MG592456 [NCBI]
CDS location
range 166328 -> 167563
strand -
CDS
ATGAGTTCTATTGATCTACCGGGAGGGAACCCGGTCTTACCAGACTACATACTGGAAGCACCAATTGATGCTATCTTGTATGGACGTATCAATGCGTCATGGCTGGAAATCCCCATTCAACTAGATGCGCCTGCTGATGGCGCAAGCTATCTCCGAAAAGACAACACGTGGGTTGAAAACATCCCAGGCGACTCTACCATCCCACCACTCCCACTTGATTTTAAAGTTTATGGGATTAGCAATGGCATGTGGACGGCGGTTACTGAAGAGGCACCCGAAGACGGCGAATCGTACGTCCGACGTGACACAGATTGGGTTGTATTCCCACAATCTGATTGGGATGTCACTGACATAACACAGCCGAGTTTCATCAAAAACAAACCGGCAATTGCACAATCAGATTGGGATATCACTGACAGCCTGTCACCAGCATATATTCTCAACAAACCTGATCCAGTTCTTGATATTTCTCGTGACCGTTCTCAGTTGGTATCGGATTATTCAGCCGACCAGACTCGAATCGCAGTGACTGATTACACCAATGTTTCGACAGTCACTGGGAATGATCCCGTCGTGAATGTTGATCCAGAATCAACACTACTGATAACGACAGATGTCACGGGAACAATTACAATCGGTGATGTCAGTAACGCCCGTGTATTCAACGGTGATGTGTTCGGGATTGACAATACGCAAAACACAGTCGACGTAGCTCTATCAGTTACAAATCCCGCGTTTCAATTCTCTGATGGGTCACAGTTGTTTACGGTACGAGACGGTGAACTTGTAAACTTTTTCGTATTCACGATCGGGGTTGACAATGTCATTTTCCCGGTGTCGAATTATCAATATCACACAACTGAAGCGATTCTTGACGACTATCTAATCACAATCCCGACGAATGTGTCGAGTAGCATTGATTATCAAATAAGTCCGACTAATCTGTTCACACAGACGATTGCTCAATCGGGTACTTATCGATTAGCAGCGACAATATACTGGCTAATTGACGAGACTAACAGGTTTTATCACTCGGCTATGAAACTAAATGGCATTGATATCGGACAAGAAGTGAAACATGAAGTGAAAGATAGAGCCAACGTGCAGAACTCAAGCTACTTACATCGATTGGATTTAGTTGCAGGTGACGTGATCTCATTCGATTATGGCCCTTCCGGCTCTGACGCGACTGTCACTATTTACGCGGGATCACAAGTGGAGATTTACAGAATATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
86d14496334e51dc31ba25f3165c3ebbcdd4df0601351df01c24ae3050fbe68d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7517
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank