Protein

View in Explore
Genbank accession
URQ09039.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MGYFQMTRNVEELFGGVITAPHQIPFTYKSNVGGETFLSLPFYPVTGVVTINGGMQVPLDNFEIEGNTLNLGRALSKGDVVYCLFDKILSPEDTAKGIRIYKFQAVGGETEFTPDFTSYGVQSLYIGGEYKTPEIEYSYNSTTGKVSLQTALTAGVWVVAEMSVKQPNISPLFDRSIQEIARSANVKDSEVIVSTDTISLLDGKKVVYDIATQTSYGLPTIPDGSVISSVSGGKLNYNPGDVQVNLLPLPNSAALLRAELGSPTGTNLVNFKNSAVGALVRSVTSKLEDNPISVKDYGCKGDGVTDDTAGLQLAVAGALSGLAIYFPKGIYLTSLPLNFTKPVTLIGEKGARIELTGGDHDYVIQFDFRDTDLMYWGYEAYMSNIIVDGKGFAKDGFSLRGVISSRFDNLRATNISRAGLHCWWTQCNLYNNFHCSKNVELFTTTPKYGILIDYEEGSPSKRGTSADTFINPVCEHTTEAGIEATFCINTIFMNGTSEGCRFGIAFGHESDLAQTAVTNTVIGMDMEVNSDGDVLLRKTATSNLFLGVMAGYSSPSSQIQGAEFNRWIGGSSSGFHFYGGTKGNKIEGTMLLGASATILDDDKTNDWDSLYNISNATYTGSTNPVNKRVQHDGTGTVTIDPMKCSLATINATSSTITINTLDNARDGMRMDMIIYNTSGQPLTVNWGDSFRIGGFVPPESGKQKGLSFVWDANFSHWYCVGMSADGLVY
Physico‐chemical
properties
protein length:729 AA
molecular weight: 78793,66430 Da
isoelectric point:4,89647
aromaticity:0,10014
hydropathy:-0,11824

Domains

Domains [InterPro]
DC_0063
STR
1–718
DC_0063
G3DSA:3.30.2020.50
ATT
161–249
G3DSA:3.30.2020.50 IPR012334
IPR011050
STR
285–645
IPR011050
IPR024535
ENZ
292–390
IPR024535
URQ09039.1
1 729
Architecture
STR
ATT
STR
STR 1-160 | ATT 161-249 | STR 250-718 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
URQ09039.1
1 729
Domain Start End Length (AA) Confidence
N-terminal 1 308 308 0,9936
Central domain 309 623 316 0,9892
C-terminal 624 729 105 0,9650
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-308
Central
309-623
C-terminal
624-729

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage BRM 13314
[NCBI] 		2654656 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica subsp. enterica
[NCBI] 		59201 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
URQ09039.1 [NCBI]
Genbank nucleotide accession
ON169963 [NCBI]
CDS location
range 85905 -> 88094
strand +
CDS
ATGGGGTATTTTCAAATGACCAGAAATGTAGAAGAATTATTCGGCGGCGTAATCACAGCTCCCCACCAGATTCCTTTCACGTATAAATCAAATGTCGGTGGAGAAACTTTCCTTTCCTTGCCGTTCTATCCTGTCACTGGCGTAGTCACAATCAACGGTGGTATGCAAGTTCCGTTAGACAACTTTGAAATCGAAGGAAATACGTTGAATCTCGGGCGCGCATTGTCCAAAGGCGATGTTGTGTATTGCTTATTCGATAAAATTCTTTCGCCAGAAGATACAGCCAAAGGTATCCGCATATACAAATTTCAGGCCGTAGGAGGTGAAACCGAGTTCACTCCTGATTTCACATCTTATGGAGTCCAATCTCTTTATATCGGTGGCGAGTACAAAACCCCCGAAATTGAATATTCTTATAACAGCACGACAGGGAAAGTGTCTTTGCAAACTGCACTGACTGCAGGCGTTTGGGTAGTCGCTGAAATGTCTGTTAAACAACCGAATATCAGTCCATTGTTTGACCGCAGTATTCAAGAAATTGCCCGTTCTGCTAATGTTAAAGACTCTGAAGTCATCGTTAGTACGGACACCATATCTTTGTTGGATGGGAAGAAAGTTGTTTATGACATAGCGACGCAAACCAGTTATGGTTTACCAACCATTCCTGATGGTTCTGTCATTTCTTCTGTATCTGGTGGGAAATTGAATTACAACCCAGGAGATGTTCAGGTTAATTTGTTGCCATTGCCTAATAGTGCTGCATTACTGAGAGCAGAATTAGGTAGTCCAACGGGTACAAATTTGGTTAATTTTAAGAATTCGGCAGTTGGTGCATTGGTACGTTCTGTTACTTCTAAATTAGAAGATAATCCGATAAGTGTTAAGGATTATGGTTGCAAAGGAGATGGTGTTACCGATGATACCGCTGGATTACAATTAGCAGTTGCAGGGGCTTTATCAGGATTGGCCATATACTTTCCTAAAGGGATTTATCTTACCAGTTTACCATTGAATTTTACCAAACCTGTGACTTTAATAGGAGAGAAGGGCGCTCGTATTGAATTAACTGGTGGTGATCATGATTATGTTATACAATTTGATTTTCGTGATACAGACCTGATGTATTGGGGCTACGAAGCATATATGAGCAATATTATTGTAGATGGAAAGGGATTTGCTAAAGACGGGTTTTCACTTCGAGGAGTAATTTCTTCTAGATTTGATAATTTACGTGCCACAAATATTTCTCGTGCGGGGCTTCATTGTTGGTGGACTCAATGTAATTTGTATAACAATTTTCATTGTAGTAAGAATGTGGAATTGTTTACCACTACACCAAAATATGGAATATTAATCGATTATGAAGAAGGATCTCCGAGTAAAAGAGGTACTTCTGCCGATACGTTTATTAATCCTGTTTGTGAACATACGACAGAAGCAGGTATCGAAGCAACATTCTGTATCAATACTATATTTATGAATGGTACTTCTGAAGGTTGTCGTTTCGGTATCGCTTTTGGACATGAATCTGATTTGGCGCAAACTGCGGTTACAAATACGGTTATTGGAATGGACATGGAAGTTAACTCTGATGGCGATGTGTTGTTGCGTAAAACCGCGACAAGTAACTTATTTTTGGGGGTTATGGCGGGTTATAGTTCTCCATCGTCGCAAATACAAGGCGCTGAATTTAACCGTTGGATTGGTGGTTCTTCTTCTGGATTCCATTTTTATGGAGGTACAAAGGGGAATAAAATAGAAGGAACTATGCTATTAGGCGCGTCGGCCACTATTTTAGATGATGATAAAACAAATGACTGGGATTCTTTGTATAACATAAGCAACGCGACTTATACAGGTTCGACTAACCCTGTTAACAAAAGGGTTCAACATGATGGGACAGGGACAGTAACCATAGATCCCATGAAATGTAGTTTAGCAACTATTAACGCGACATCTTCCACAATAACCATCAATACTTTAGATAATGCCAGAGACGGGATGCGTATGGACATGATTATCTATAATACATCAGGGCAACCACTTACTGTAAATTGGGGAGACAGTTTCCGTATTGGGGGATTTGTTCCTCCAGAATCTGGTAAACAAAAAGGATTGTCCTTTGTGTGGGATGCTAACTTTTCTCATTGGTATTGTGTTGGTATGTCTGCAGATGGTTTAGTTTATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
83cd28be8d83f32c440efcc36922b723fd20a58bd84d87d604dfb8c55c9afea3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7673
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization, comparative genomic analysis and efficiency of wild-type bacteriophages on the reduction of Salmonella Heidelberg colonization in broiler chickens Vaz,C.S.L., da Fonseca,F.N., Voss-Rech,D., Mores,M.A.Z., Coldebella,A. and Cantao,M.E. 2024-05 — GenBank