Protein

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Genbank accession
WAB24973.1 [GenBank]
Protein name
periplasmic copper-binding protein
RBP type
TSP
Evidence RBPdetect2
Probability 0,89
Protein sequence
MGRHIMNSDLSLTSARQFGVIADGVTDETAKVQQAVDASNGIVFVPKGVKFNLSALTLPFDVILFYIPVGSSTMKVKTGGTQGFLEIDGFTKSKRYLGSEGQSYIEIAPNGEILFNDGTTDKFMISATGVKKKVDTDWLDVASHSTAYQFSGKVEANKTGKIKVAGSQSVRKVMPCGGRIVNASIMPSSDIPNGQLTGYIQKNGTTVMELNFLGAGGFNQPQFFNAPKDANEKFLKGDLIEVLYLTDSTWTQLDVDILVDVLVSFD
Physico‐chemical
properties
protein length:266 AA
molecular weight: 28702,33870 Da
isoelectric point:5,49021
aromaticity:0,09023
hydropathy:-0,05752

Domains

Domains [InterPro]
DC_0607
STR
5–254
DC_0607
IPR012334
STR
7–151
IPR012334
IPR011050
STR
14–111
IPR011050
WAB24973.1
1 266
Architecture
STR
STR 5-254 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WAB24973.1
1 266
Domain Start End Length (AA) Confidence
N-terminal 1 59 59 0,6352
Central domain 60 255 197 0,1478
C-terminal 256 266 10 0,9777
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-59
Central
60-255
C-terminal
256-266

Taxonomy

  Name Taxonomy ID Lineage
Phage Lysinibacillus phage vB_LfM_LysYB1
[NCBI] 		2995278 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lysinibacillus fusiformis
[NCBI] 		28031 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WAB24973.1 [NCBI]
Genbank nucleotide accession
OP628075 [NCBI]
CDS location
range 24028 -> 24828
strand +
CDS
ATGGGTAGACACATAATGAATTCTGACTTATCGCTTACGAGCGCTCGACAGTTCGGAGTTATAGCTGACGGCGTAACGGATGAAACTGCTAAAGTACAACAAGCAGTTGACGCTTCAAACGGTATTGTATTTGTTCCAAAGGGTGTCAAATTCAATTTGTCTGCATTGACTTTACCATTTGACGTGATTCTGTTTTACATTCCTGTCGGTTCCTCAACTATGAAAGTAAAAACGGGAGGAACACAAGGATTTCTAGAAATAGACGGGTTTACAAAAAGCAAGAGATATTTGGGTTCTGAAGGACAATCTTATATTGAGATAGCCCCAAACGGGGAAATTCTATTCAACGACGGCACAACCGACAAATTTATGATTTCTGCTACTGGTGTGAAGAAGAAAGTTGATACCGATTGGCTTGATGTCGCTAGTCATAGCACAGCATACCAGTTCTCGGGAAAAGTAGAAGCGAACAAAACAGGGAAAATCAAAGTAGCAGGTTCTCAAAGTGTAAGAAAAGTTATGCCTTGTGGTGGTAGAATCGTCAACGCTTCAATTATGCCATCCTCAGATATTCCAAACGGACAACTCACAGGGTATATCCAGAAAAATGGCACTACTGTCATGGAACTCAACTTCTTGGGGGCAGGAGGTTTCAACCAACCACAGTTCTTTAATGCTCCCAAGGACGCCAACGAGAAGTTCTTGAAGGGTGACTTGATTGAAGTACTTTATCTGACAGATAGCACTTGGACTCAGCTAGACGTAGACATTCTTGTAGATGTGTTGGTATCATTTGACTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
883a9ec2c53aa242c9cfcfdee082c1b9c3633a06bb55bf50deff2f3ee0e3a63e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6223
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50