Protein

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Genbank accession
YP_007676032.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MTYPATNSNEAIELIIDGGNQLHQIINEDALTEVTTESGPVPSVRKAISDTFLFQEPITWQQGSNETAFNQLREFNNEIYWAPSATVVNPIPMRVTPVGDSNWKIAPISNKSYIKGEDTKSQEELLPPSSQIFPEIGALSDGDTVTEGATHLRVEIGGQPSIVTMSPVANGLVSDLTETSATIGGVATVFNNHSILKYIESSNGSAIENMISGEPTVALVGDICVAGGSTFKRVATSSPAVIGDFKRLTEVNILESGALGDWDGASGTDDTAAIQSFVNSLENVDILLPSGYTFRTQGILGKPGVKFVGGGRFYYEPNDVVVKTDYPKKAKRCYMYTWEIRHVEEFLQIKSLGFNTLIHYGQYYTGGNLSQTMNSLASTDMDIVMYHRTDASDVPEIDYDDWSQVIGYNLFDEPTQHGNFATQQQARIDAYRAVTNKDLYVVDNADNLIGSTGIWSPDWDVFLLDFYADSTLTYETQRAQLHRVWLQVKEACPRANITPAVGLFTLPPQFADKAAQIKLAKKLYHISKDGDFAVFGWNPNVTGGSFTDVLTDSDFMELAEDLTTKQSNSYEIDAVIFRPNSDPTTIAQLVRSYIGEYSVNMKTYSVENVGSATDARHSTFSWKGIGIANDGGIFATNLLSRNYSEARIEYENKFNAATATISIDTYLDDFFRRTKIYIPTLYQVVRNQYRIQF
Physico‐chemical
properties
protein length:693 AA
molecular weight: 76644,53930 Da
isoelectric point:4,66946
aromaticity:0,10534
hydropathy:-0,26681

Domains

Domains [InterPro]
DC_0194
STR
1–692
DC_0194
IPR058969
ATT
6–105
IPR058969 IPR011050
YP_007676032.1
1 693
Architecture
ATT
STR
ATT 1-105 | STR 106-692 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007676032.1
1 693
Domain Start End Length (AA) Confidence
N-terminal 1 271 271 0,9525
Central domain 272 506 236 0,7015
C-terminal 507 693 186 0,1758
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-271
Central
272-506
C-terminal
507-693

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage PWH3a-P1
[NCBI] 		754058 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio natriegens
[NCBI] 		691 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007676032.1 [NCBI]
Genbank nucleotide accession
NC_020863 [NCBI]
CDS location
range 99367 -> 101448
strand -
CDS
ATGACATATCCTGCTACAAACAGTAATGAAGCTATAGAATTAATTATTGATGGAGGTAACCAATTACATCAAATAATTAATGAAGACGCTTTAACAGAAGTAACAACAGAAAGTGGACCTGTTCCCTCTGTACGTAAAGCTATTTCAGACACCTTTTTGTTTCAAGAGCCGATTACTTGGCAACAAGGTTCTAATGAAACTGCTTTTAATCAATTACGTGAATTTAATAATGAGATTTATTGGGCACCAAGTGCTACAGTAGTTAATCCTATCCCTATGAGAGTAACTCCTGTAGGAGATAGTAATTGGAAGATTGCACCAATAAGCAATAAGTCTTATATAAAAGGAGAAGATACAAAATCGCAAGAAGAATTACTGCCACCAAGCTCTCAGATTTTCCCAGAGATTGGGGCTTTATCTGATGGGGATACTGTAACAGAGGGAGCTACGCACCTTCGTGTTGAGATTGGAGGTCAGCCCTCCATTGTTACCATGTCACCAGTTGCTAATGGATTGGTTTCTGATTTAACAGAAACTAGTGCGACTATTGGCGGCGTTGCAACTGTATTTAATAACCACAGCATATTGAAATATATAGAATCTAGTAATGGCTCGGCAATAGAAAACATGATTTCAGGAGAACCAACCGTTGCGTTGGTTGGGGATATTTGTGTTGCTGGAGGCTCTACCTTTAAAAGAGTGGCGACGTCATCACCAGCAGTTATCGGTGACTTTAAAAGGCTTACAGAGGTTAACATTCTTGAGTCCGGTGCGCTCGGTGATTGGGACGGTGCTTCTGGTACTGATGATACAGCAGCAATACAATCGTTTGTAAATAGCTTGGAAAACGTAGATATACTACTACCGAGCGGCTACACGTTTAGAACGCAAGGTATCTTAGGCAAGCCTGGTGTTAAATTTGTGGGTGGAGGCAGGTTCTATTACGAGCCTAACGATGTTGTAGTTAAAACCGATTATCCAAAGAAAGCAAAGCGTTGCTATATGTATACGTGGGAAATTAGGCACGTTGAAGAATTTCTGCAAATTAAGTCGTTGGGATTTAATACGTTGATACATTATGGTCAATACTACACTGGGGGAAATCTATCTCAGACGATGAACTCGTTAGCATCAACAGATATGGATATAGTTATGTATCACAGAACTGACGCCTCGGATGTTCCAGAAATTGATTACGACGACTGGTCACAAGTCATAGGATACAACCTGTTTGATGAGCCAACTCAGCATGGAAACTTTGCCACACAGCAACAAGCCCGCATAGATGCATACAGAGCAGTGACAAACAAGGATTTATATGTTGTTGATAACGCGGATAATTTGATTGGATCAACTGGGATATGGTCGCCAGATTGGGATGTTTTCTTGCTCGACTTTTATGCCGACTCAACATTGACATACGAAACTCAACGAGCGCAACTGCATCGAGTTTGGCTACAGGTAAAAGAGGCATGTCCACGCGCTAATATAACTCCAGCAGTTGGTTTATTCACACTGCCACCTCAATTTGCAGATAAGGCAGCCCAAATAAAACTTGCAAAAAAACTTTATCATATATCTAAAGATGGTGATTTTGCCGTGTTTGGCTGGAATCCAAATGTTACCGGTGGTTCATTCACAGATGTACTTACTGATTCAGATTTTATGGAATTAGCTGAGGATTTGACGACCAAACAATCAAATTCCTACGAAATAGATGCCGTCATATTTAGACCGAACTCTGACCCAACAACCATAGCTCAACTAGTAAGATCCTACATTGGCGAATACTCGGTAAACATGAAAACCTACTCGGTTGAAAATGTAGGTTCAGCAACCGATGCGAGACATTCAACGTTCAGTTGGAAAGGTATTGGGATCGCAAACGATGGTGGTATATTTGCCACAAACTTGTTATCTAGAAATTACTCTGAAGCAAGGATTGAATATGAAAACAAGTTCAACGCAGCAACTGCAACTATAAGCATTGACACATATTTGGATGACTTTTTTCGCAGGACGAAAATCTATATACCGACACTTTATCAAGTGGTACGCAATCAATACAGAATTCAATTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e043b4f17be8142e4819e2aa8f8490b3406ca614bccc670438282afbbe6bc24f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5874
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Vibrio phage PWH3a-P1 Henn,M.R., Suttle,C., Winget,D., Chan,A., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank