Protein

View in Explore
Genbank accession
YP_010748122.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MALVIHYTRNEDGTFDVKRYRDNPMNFVVNHVPDGVPVRVFIDEIGEDNDVTEDFEALKENATFHIVESAGGGAIKGVMKIFSVILKPLAKLLSPSVKGASSNLANSQADSPNNSLTDRNNKARPYERSYDICGTVQTIPNNLMSTYKVFNAAGKIVEYGYYDAGRGYLDIHPDGITDGDTRVSDITGTSVAVYAPYTSPNNTSTPQVMVGDPIEQGLYITVESNEVDGVVLKAPNGLGISFSYMSGYPSLSGNIGTIYDPTGGSDFSGVLVPNDTFSLVSAWTNADVDLSGGGYQVVSVSEGTVTFIVPGGLIGRWQEIRPGSFFRGDGEASLQPDNTYEKTLTDWVSINRTEVERIVANIAAANGMYKDNGKSKTLAYVTAEIQYQLLDENSAPYGPIYTAQGTVSGRTPDYNGVTIYADLPIASRVRVRARRVTDLDFNFEGSVVDEITYVNLYGQTRDNTPHYGNRTTVHSMRKQTPRAAEVKQPQLRMIATEMVYKYLGNGVFEDTMTPNTQAVQSLIRLARDPDVGGLNLTVRNMDKLLAVQKEIEDYFGDKQAGEFCYTFDDYKTTMQDIVSIIADAIFCTPYGRGADILLDFERPRMGPEMVFTHRSKAGTSEKWTRTFNDAQVFDSLKFSYIDPKTNVKETITIPETGGLKTETYDSKGIRNYKQAFWAAHRRHQKNILKKISVSFTATEEGIFALPNRAISVVKGSRMATYDGYVTAVNGLTVELSQPVKFTSGDDHSLILKLRDGGVQSVNVVPGAHDRQVIMTSVPQEAIYTGNSALKTEFSFGNEARHNAQMILVSTVDPGDDRTVKITGFNYDKDFYKFDNVPPFGRAFSSGFDNCFN
Physico‐chemical
properties
protein length:852 AA
molecular weight: 93853,90500 Da
isoelectric point:5,22097
aromaticity:0,09859
hydropathy:-0,35141

Domains

Domains [InterPro]
DC_0118
STR
1–685
DC_0118 DC_0808
NF040662
Unmapped
352–832
NF040662
YP_010748122.1
1 852
Architecture
STR
RBD
STR 1-685 | RBD 703-846 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010748122.1
1 852
Domain Start End Length (AA) Confidence
N-terminal 1 228 228 0,9614
Central domain 229 427 200 0,7139
C-terminal 428 852 424 0,1879
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-228
Central
229-427
C-terminal
428-852

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SLMP1
[NCBI] 		2795238 Uroviricota > Caudoviricetes > Sarkviridae > Jerseyvirus > Jerseyvirus SLMP1
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010748122.1 [NCBI]
Genbank nucleotide accession
NC_073208.1 [NCBI]
CDS location
range 17276 -> 19834
strand -
CDS
TTGGCGCTAGTAATCCACTACACACGAAACGAAGACGGCACGTTTGATGTCAAGCGCTACCGCGATAATCCGATGAACTTCGTCGTGAACCATGTTCCGGACGGGGTTCCGGTACGTGTTTTCATCGACGAAATCGGAGAAGATAACGACGTAACAGAAGACTTCGAAGCACTGAAAGAAAACGCGACTTTCCACATTGTGGAATCTGCCGGTGGTGGCGCCATTAAAGGAGTCATGAAGATTTTTAGCGTTATCCTTAAACCGCTGGCGAAACTATTATCGCCGTCCGTGAAAGGTGCGTCCTCGAACCTTGCGAACTCGCAGGCGGATTCCCCAAACAACAGTCTTACTGACCGTAACAACAAGGCGCGCCCGTACGAGCGCAGCTACGACATCTGTGGGACGGTGCAAACAATACCCAATAACCTTATGTCTACTTATAAGGTGTTTAACGCTGCTGGTAAAATTGTAGAGTACGGCTACTACGACGCTGGGCGCGGCTACCTCGACATCCACCCGGACGGTATAACGGACGGGGACACCCGTGTATCGGATATAACAGGTACGTCGGTTGCCGTGTATGCCCCGTACACATCACCAAATAATACATCTACACCCCAGGTCATGGTAGGGGACCCCATAGAGCAGGGCCTGTACATCACCGTAGAATCTAACGAAGTGGATGGCGTGGTTTTGAAAGCGCCCAACGGTCTCGGCATTTCTTTCTCTTACATGTCGGGGTATCCGTCTTTGTCAGGAAACATTGGCACTATATACGACCCTACAGGCGGCTCGGATTTTTCTGGAGTACTGGTGCCTAATGACACGTTTTCGCTGGTGTCCGCGTGGACAAATGCAGACGTTGACCTGTCCGGCGGCGGGTATCAGGTAGTCAGCGTGTCCGAAGGGACTGTTACCTTTATAGTACCTGGTGGTCTCATTGGTAGGTGGCAAGAAATAAGACCGGGTTCGTTTTTCCGTGGTGATGGAGAGGCCTCGCTGCAACCAGACAACACGTATGAGAAAACCTTAACCGATTGGGTTTCAATAAACCGCACCGAGGTTGAGCGCATCGTGGCCAATATCGCCGCTGCGAACGGCATGTATAAAGACAACGGCAAATCGAAAACACTGGCATACGTTACCGCTGAGATACAGTACCAGTTACTTGATGAAAACAGCGCTCCTTACGGGCCGATATATACCGCGCAAGGAACCGTGTCCGGACGCACCCCAGACTATAACGGCGTCACTATCTATGCCGACCTGCCGATTGCGTCTCGCGTAAGGGTCAGGGCCCGCAGGGTTACAGACCTTGATTTCAATTTTGAAGGGTCTGTGGTTGATGAAATAACGTACGTTAACTTATACGGGCAAACACGTGATAACACTCCGCACTACGGCAACAGAACAACCGTACACTCGATGCGCAAGCAGACACCGCGCGCTGCGGAGGTTAAGCAACCGCAGTTGCGTATGATTGCCACCGAAATGGTATACAAATACCTCGGTAATGGTGTTTTCGAAGACACGATGACCCCTAATACTCAGGCCGTGCAATCTCTTATCCGCCTGGCACGTGACCCAGATGTGGGCGGCTTAAACCTGACAGTGAGAAACATGGACAAGTTACTTGCCGTTCAGAAAGAGATTGAAGATTATTTCGGCGACAAGCAAGCAGGGGAATTTTGCTACACGTTCGATGACTATAAAACCACTATGCAGGACATAGTTAGTATTATAGCCGACGCTATCTTCTGTACGCCATACGGGCGTGGGGCGGATATCCTTCTCGATTTTGAACGCCCTCGCATGGGCCCCGAGATGGTGTTCACCCACCGAAGTAAGGCCGGTACTTCCGAAAAATGGACCAGAACCTTTAACGATGCTCAGGTGTTCGATAGTCTTAAATTCTCGTACATAGACCCTAAAACAAACGTTAAAGAAACAATAACAATACCAGAAACCGGGGGCCTTAAAACGGAGACTTATGACTCAAAAGGAATCCGCAACTATAAGCAGGCTTTCTGGGCAGCGCACCGCCGCCACCAGAAGAACATTTTAAAGAAAATTTCAGTGTCGTTTACCGCCACTGAAGAGGGTATTTTCGCCCTTCCGAATCGTGCCATTAGTGTGGTTAAGGGTTCACGTATGGCGACCTACGACGGCTACGTAACCGCGGTAAACGGGCTCACCGTAGAACTGTCACAACCAGTTAAGTTCACCTCGGGAGATGACCATTCTTTGATTCTCAAGTTACGTGACGGCGGCGTGCAAAGTGTTAATGTAGTCCCTGGAGCGCACGACAGGCAGGTGATTATGACTTCTGTGCCGCAAGAAGCCATTTACACTGGTAATAGCGCTTTGAAAACTGAATTTTCATTCGGCAACGAAGCAAGGCATAATGCTCAGATGATTCTTGTTTCTACGGTAGACCCTGGCGATGACAGAACAGTCAAAATAACCGGGTTTAACTATGACAAGGATTTCTATAAGTTTGACAACGTGCCTCCTTTCGGTCGTGCGTTCTCCAGCGGATTCGATAACTGTTTTAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
85cadd46058e8f937050c24240db31e91cff1097026c19466917e006612a0a53
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8264
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of a Salmonella lytic bacteriophage SLMP1 Jiang,Y., Wang,L., Qu,M., Li,F., Tan,Z. and Yao,L. 2005-02 — GenBank