Protein

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Genbank accession
YP_009850624.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MSNPFNADQSGKIAYQAPNGTYDMVIGTAEGTTSRIALQFFDYQSVVDAQNQTSANLAAQQALLTQTQDIINGAGDQSTLVRLNQPDGLNLIGAAPEGYGNPPTTPSHLNDVIKRVTPFQFGAKGDGVTDDSDAIQAAHDWCMQQSSRDAADPTRRIGGYVLDLNGPKYWLIKKPLKLNFGSINIEFGKSTLDCRQFPVGADENNHTVVISATYAGAYQQTRAWWSDLNMLGPGQESFCTAVRCNMTSAVPGGYERLCNVLYGGGIEQFGRGLSVGSNCYFLTCYNLSFGHCNEAYYFEPGGKNYGEQITFYSCVFNAGNYQVTTYGGMSNFYGCSFDYCYHQQMKLLGGMVNCVNCWWEGYGPVDYIINIPESTTSVRLNIIGGLFSFKAGATGAESRATSNPFYFGTRASVKFENVQFQKLGNAYYGDSTTAWIDGASQGVSFSGCYFPNSANSFTTVIMNSDPSVINNQFATESYTLGIGAENWLGDTWILPNSDNGLVRKNRWGYGLSNGGTTFSFTRTSNGFVNLDVTQPANSGTFEAVIGTIPVKSTGQVVHYVSGNLYLGTGDGSVNIKTYWVKLIVKGTPDNPDEPRILQMVKATDVNYPIGGTSGQLHSFRWPPSMPTGTQSPASTTVAPDWATHCIMTLDISKIKRNMGGIRINEVFMRQI
Physico‐chemical
properties
protein length:671 AA
molecular weight: 72993,64630 Da
isoelectric point:5,46515
aromaticity:0,11773
hydropathy:-0,26751

Domains

Domains [InterPro]
DC_1436
ATT
1–157
DC_1436
IPR012334
STR
75–561
IPR012334
IPR011050
STR
114–498
IPR011050
DC_0715
STR
115–562
DC_0715
YP_009850624.1
1 671
Architecture
ATT
STR
ATT 1-157 | STR 158-562 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009850624.1
1 671
Domain Start End Length (AA) Confidence
N-terminal 1 131 131 0,9926
Central domain 132 483 353 0,9941
C-terminal 484 671 187 0,9561
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-131
Central
132-483
C-terminal
484-671

Taxonomy

  Name Taxonomy ID Lineage
Phage Serratia phage MyoSmar
[NCBI] 		2596673 Uroviricota > Caudoviricetes > Lindbergviridae > Myosmarvirus myosmar >
Host Serratia marcescens
[NCBI] 		615 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009850624.1 [NCBI]
Genbank nucleotide accession
NC_048800 [NCBI]
CDS location
range 47320 -> 49335
strand -
CDS
TTGTCAAACCCGTTTAACGCAGATCAGAGCGGTAAAATCGCATATCAGGCTCCAAACGGAACATATGACATGGTCATTGGTACTGCAGAGGGCACGACTAGTCGAATTGCCCTTCAATTCTTCGATTACCAAAGTGTAGTGGATGCGCAGAACCAAACTAGTGCCAACTTGGCGGCGCAACAAGCCCTGCTTACTCAGACCCAGGACATCATCAACGGAGCCGGTGACCAATCGACTCTGGTCAGACTCAACCAGCCGGATGGCCTAAACCTTATCGGCGCGGCACCAGAGGGGTATGGCAATCCGCCGACTACCCCATCGCACCTGAATGACGTCATAAAGCGAGTGACGCCATTCCAATTTGGCGCAAAGGGCGACGGTGTTACTGACGATTCCGATGCGATACAAGCAGCGCATGATTGGTGCATGCAACAATCTTCAAGGGACGCGGCGGATCCCACTCGAAGGATTGGCGGATATGTACTTGATTTGAATGGGCCAAAATACTGGCTGATCAAGAAGCCGCTGAAATTAAACTTCGGCAGTATCAACATCGAGTTTGGCAAGTCAACCCTTGATTGCCGCCAGTTCCCTGTCGGAGCCGACGAAAACAATCACACGGTCGTAATCAGCGCAACATACGCTGGCGCGTATCAGCAAACACGTGCGTGGTGGAGCGACCTGAACATGTTGGGGCCAGGTCAGGAATCGTTCTGCACGGCGGTTCGTTGTAACATGACTTCAGCAGTTCCTGGTGGATACGAGCGCCTTTGCAACGTCCTGTACGGCGGCGGAATCGAACAATTCGGGCGTGGCCTCTCTGTTGGCTCCAACTGCTATTTCTTGACTTGTTACAACCTTTCGTTTGGGCATTGTAATGAGGCTTATTACTTCGAGCCTGGTGGCAAGAACTATGGCGAACAAATCACATTCTATTCTTGTGTATTCAACGCCGGAAACTACCAGGTCACAACGTATGGTGGCATGAGCAACTTCTATGGATGCTCATTCGACTATTGCTATCACCAGCAAATGAAGTTGTTGGGCGGCATGGTGAACTGCGTTAATTGTTGGTGGGAGGGTTATGGCCCAGTTGATTATATCATCAACATCCCAGAGTCAACGACGTCAGTGCGATTGAACATCATCGGCGGATTGTTCTCATTCAAAGCTGGCGCGACTGGCGCTGAGTCAAGGGCGACGAGCAACCCATTCTATTTCGGAACCAGGGCGTCAGTTAAATTTGAGAATGTGCAGTTCCAGAAGTTGGGTAATGCGTATTATGGTGACAGCACCACCGCATGGATTGACGGAGCGTCGCAGGGCGTTTCATTTAGTGGATGTTATTTCCCGAACAGCGCAAACTCTTTCACGACCGTGATTATGAACTCAGACCCATCGGTGATCAACAACCAATTTGCAACCGAAAGCTACACGCTTGGTATTGGGGCTGAAAACTGGCTGGGTGATACGTGGATACTTCCGAATTCCGACAACGGATTGGTTAGAAAGAATCGCTGGGGATATGGGCTGTCAAATGGCGGCACCACATTTTCCTTCACAAGAACATCAAACGGATTCGTGAACCTTGATGTCACCCAGCCAGCCAACTCAGGCACCTTTGAAGCGGTCATAGGCACCATTCCTGTAAAAAGTACAGGCCAGGTTGTTCACTATGTATCCGGCAATTTGTATCTTGGCACAGGCGACGGATCAGTGAACATCAAGACTTACTGGGTTAAATTAATCGTCAAGGGAACGCCAGACAATCCTGATGAACCTAGAATCCTTCAGATGGTTAAGGCCACTGACGTGAACTATCCAATCGGAGGAACTTCAGGGCAGCTTCACTCATTCAGGTGGCCGCCATCAATGCCGACCGGCACCCAATCGCCTGCATCAACTACAGTTGCGCCTGATTGGGCAACCCATTGCATTATGACTTTGGATATTTCAAAGATCAAACGTAATATGGGCGGCATCCGAATCAATGAAGTGTTCATGCGCCAAATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
88578e2c281e76b6a90f162989d54a2e052fe45269af14072eb159a961f53a1d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6953
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50