Protein

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Genbank accession
AGH56453.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MSTIKVNKIEGASDFNFQINMPAAAHLNIRGSFAIDESSGLKLPVGTTAERPTTPVAGMIRFNSTLGNVEGYDGGSWINLMTPENAAAGGGASSDVPREGLLIWLDANNPASLKENSTDQDANYWYDISGSNFHFSIPTDRYAQESINGSPVKYMDFSANGGGCAKFSHSNYIDTPWFPHVSVVFFMKWRTTNSQWRTPLRSRDADHHIIVQDGTYNLGMYDNNGAGFQDTGYDINNFPNWDSKFNMYTWRLSNYTSGQYSPCYQCYFADEQNARATNNSGNAQFNRGFHSVGAYHSGDRNPHTSSQNAGGIGVFMYYSRHITQAERAQIYNYYKDTYDI
Physico‐chemical
properties
protein length:340 AA
molecular weight: 37947,04490 Da
isoelectric point:5,63794
aromaticity:0,13824
hydropathy:-0,62853

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGH56453.1
1 340
Domain Start End Length (AA) Confidence
N-terminal 1 148 148 0,1624
Central domain 149 329 182 0,0885
C-terminal 330 340 10 0,9945
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-148
Central
149-329
C-terminal
330-340

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage Syn2
[NCBI] 		536473 Uroviricota > Caudoviricetes > Pantevenvirales > Pontusvirus > Pontusvirus syn19
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH56453.1 [NCBI]
Genbank nucleotide accession
HQ634190 [NCBI]
CDS location
range 143600 -> 144622
strand +
CDS
ATGAGTACTATTAAGGTCAATAAAATAGAGGGAGCATCTGATTTTAATTTTCAGATTAATATGCCCGCAGCGGCACATCTGAACATTAGAGGATCATTTGCTATTGATGAGTCGTCTGGACTAAAACTCCCTGTAGGAACTACTGCCGAGAGACCTACAACTCCTGTTGCTGGAATGATTCGATTTAATTCGACTCTAGGAAACGTAGAGGGATATGATGGTGGTAGTTGGATAAACTTAATGACCCCTGAAAATGCTGCCGCTGGAGGTGGCGCGAGTTCTGATGTTCCTAGAGAAGGATTACTTATATGGTTAGATGCCAATAATCCTGCATCCTTGAAAGAGAATTCAACAGATCAGGATGCGAATTATTGGTATGATATTTCTGGATCAAATTTTCACTTTAGTATTCCTACCGATAGATACGCTCAAGAGTCTATCAATGGATCTCCAGTGAAATATATGGACTTTTCAGCAAATGGTGGTGGGTGTGCTAAATTTTCACATTCTAACTATATTGATACTCCTTGGTTTCCTCATGTATCCGTTGTATTCTTTATGAAATGGAGAACTACTAATAGTCAGTGGAGGACACCTTTGCGTTCTCGTGATGCTGACCACCATATCATTGTGCAAGACGGTACATATAACCTAGGCATGTATGATAATAATGGTGCAGGTTTCCAAGATACTGGATATGATATTAACAATTTCCCTAACTGGGATAGTAAGTTCAACATGTATACTTGGAGATTATCAAACTATACTTCTGGTCAGTATTCTCCTTGTTACCAATGTTATTTTGCTGATGAGCAAAATGCTAGAGCAACAAATAATAGTGGAAACGCACAATTCAATAGAGGATTTCACTCTGTAGGTGCTTATCATAGTGGTGACAGAAATCCCCATACTTCATCTCAGAATGCTGGTGGTATTGGTGTGTTCATGTATTACAGTAGACATATTACTCAGGCAGAAAGAGCGCAGATATATAATTACTACAAGGATACATACGATATCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
b1fbfdf6553800be485bd7d41b1e740adc10685d5e22e5fb67ff2434f20fc4bd
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7589
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage Syn2 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank