Protein

View in Explore
Genbank accession
QYC52528.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MQPGTYKMGTMSPQQIAAVDKAYREGQAEEARKKEAIDVQKSKEGVRYTIFASGLRNGRLSELEGKNSTTDIAIIFDAVETHSYGKSYNKTSYAVESRAKASDHVVTQDGTFSFTGRITSSPYFIDNRNIIDVDTDWEHPMEAKRPEKALEILQRIADSHQLISLVTEDNILSGYVITRFTVTRTTSEGAAIVVSVELEEFRFKQVGRTVLARTADPKKAGNKNSGSKQTAEGGAADDAAKGKRQSPYLGGSREAYEYMENKGFGTTDFSGKAGAQIKPTVKFDPASLQRPGA
Physico‐chemical
properties
protein length:293 AA
molecular weight: 32084,39940 Da
isoelectric point:8,49895
aromaticity:0,07850
hydropathy:-0,63618

Domains

Domains [InterPro]
DC_0288
ATT
8–75
DC_0288 IPR048494
DC_0628
STR
57–283
DC_0628
QYC52528.1
1 293
Architecture
ATT
STR
ATT 8-210 | STR 211-283 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SSBI34
[NCBI] 		2861009 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QYC52528.1 [NCBI]
Genbank nucleotide accession
MZ520832.1 [NCBI]
CDS location
range 65246 -> 66127
strand +
CDS
ATGCAACCAGGAACTTATAAAATGGGAACCATGTCTCCGCAGCAAATAGCCGCAGTTGACAAAGCTTACAGGGAAGGTCAGGCAGAGGAGGCTCGGAAGAAGGAGGCTATTGATGTTCAGAAATCTAAAGAGGGTGTCAGATACACAATTTTTGCATCTGGCTTAAGAAATGGAAGGTTAAGTGAACTGGAAGGTAAGAACTCCACCACGGATATAGCTATAATTTTCGACGCCGTAGAGACACACTCTTATGGAAAGTCTTACAATAAGACAAGCTATGCGGTAGAGTCGAGAGCAAAGGCATCTGATCACGTTGTTACTCAAGACGGGACATTTTCCTTTACAGGTAGAATAACATCAAGCCCTTATTTCATTGACAATAGGAACATTATTGATGTAGATACCGATTGGGAACACCCGATGGAGGCAAAGAGGCCAGAAAAGGCACTGGAGATACTTCAACGGATCGCCGATTCCCATCAACTTATTTCCTTAGTTACCGAGGATAATATTTTATCTGGGTATGTGATAACAAGATTCACTGTAACAAGGACGACAAGTGAAGGTGCTGCCATCGTTGTTAGTGTGGAGCTTGAAGAATTCAGATTCAAACAAGTTGGCAGAACTGTCCTGGCAAGAACTGCCGATCCTAAAAAGGCAGGTAATAAGAACTCAGGTTCTAAACAGACAGCCGAAGGAGGCGCTGCCGATGATGCAGCCAAAGGTAAGCGACAATCCCCTTATTTAGGTGGATCAAGGGAAGCCTACGAATACATGGAGAATAAGGGATTTGGTACAACAGACTTCTCAGGAAAAGCTGGAGCACAAATAAAACCAACGGTTAAATTTGATCCTGCTTCTCTACAAAGACCGGGGGCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4fe02696609309af18cf3f17e7b37a0f0659369922df11655e713cc51e63c344
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6527
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
SE-Phage-SSBI34 a novel bacteriophage of Salmonella typhimurium, provides insight in to genus certrevirus Sattar,S., Khanum,S., Altermann,E., Bailie,M., Shamsi,B. and Ullah,I. 2022-01-25 — GenBank