Protein

View in Explore
Genbank accession
UPU15972.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MARKRWSRRNLGPGEQWGREVETEIESLSTQIESLRNSANLNNQQINGTLNTFSTMIQTLQEQQEILTEQQAQILDTINKLSTASVWWAASTNVLIAQAPAYTDVANIVNLRVPEGYSQALILGVSQVDLTAYSSSAFSAFQGGVATVIGGQAGWLMPVHGYPQYEIDLNTSIVQSEYQATTSASSSTVRFMEGLTTNQQIVVSTRLQAGAGNTNIYGTATTSCQAIYFK
Physico‐chemical
properties
protein length:230 AA
molecular weight: 25068,62150 Da
isoelectric point:4,88005
aromaticity:0,07826
hydropathy:-0,19696

Domains

Domains [InterPro]
Coil
Unmapped
18–45
Coil
UPU15972.1
1 230
Architecture
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Stenotrophomonas virus Jojan60
[NCBI] 		2932861 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Stenotrophomonas maltophilia
[NCBI] 		40324 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UPU15972.1 [NCBI]
Genbank nucleotide accession
ON045087.1 [NCBI]
CDS location
range 26733 -> 27425
strand +
CDS
ATGGCACGCAAGCGTTGGTCGCGCCGTAATCTTGGTCCAGGCGAGCAGTGGGGACGAGAAGTCGAAACTGAGATTGAGTCACTGTCTACGCAGATCGAGTCTCTGCGCAATTCGGCGAACCTGAATAACCAGCAGATCAATGGGACGCTGAATACGTTTTCTACGATGATTCAGACGCTCCAGGAGCAGCAGGAAATCCTCACAGAGCAGCAGGCGCAGATCCTTGACACCATTAACAAGTTGTCTACGGCCTCCGTGTGGTGGGCTGCGTCCACCAACGTGCTCATTGCGCAGGCACCGGCCTATACGGACGTGGCGAACATCGTGAACCTGCGTGTTCCGGAAGGCTATTCGCAGGCGCTGATTCTTGGGGTCAGTCAGGTAGACCTGACGGCTTACTCGTCGTCTGCCTTCTCGGCATTTCAGGGCGGTGTCGCGACCGTGATCGGGGGCCAGGCAGGTTGGCTGATGCCGGTTCATGGCTACCCGCAGTATGAGATCGATCTGAATACGTCCATCGTCCAGAGCGAGTACCAGGCCACCACCAGCGCTTCCTCCAGCACCGTGCGATTCATGGAAGGTCTGACGACAAACCAGCAGATCGTAGTTAGTACCCGCCTCCAGGCGGGGGCCGGAAACACCAATATCTACGGTACCGCAACGACTTCCTGTCAGGCTATTTACTTCAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9a5593d7b9b153e4a64df4212311f5f073af9266fbcb313e62a2030f819e7ce4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7720
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete nucleotide sequence of Jojan60: a novel virus type that lyse Stenotrophomonas maltophilia from dog with chronic otitis Petrzik,K. and Brazdova,S. 2023-07-17 — GenBank