Protein

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Genbank accession
YP_009188177.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MARTVPGSGAIIQPEFNSVFGVRAVAVVNGGDGYDANDPPKLTVQNCGTPLREAVLRPIIQDNRILAVEILDPGEGYDPLRLKIDSTDEGSLGARGKVFLNETGGIDYIQMTTLGDNYFDGTSAVIEGGGGSGSELVPVTGGVTGLVITREGRNYDLNDANVVISGGGGGDGATGTVTPNQFGKVTSITLTNQGEFFETAPIVQIIGGGGKGAAANASIDLGAITSIDLTNKGNGYTNSPKVIFARDTNLIRKQRNRQSLNSVVYNLTGLISDVAPSDSTINVETTAAYPGSGKFLVGKEIVRYTGKTATSFTGLDRGINFRFDQKVILDNLQDDANGVSQYSFEVTDQVKRFVASATSRVAIVYDWDPVAHALYLTFEVDELAFIDGGNSSDKTASIQFVAGSAQSSGTGVSPHVIIDSAGNDIVTFTDPLSAILNKAFEDDDELDGVGDGIIDLVNTGTEFENDINLDGGIASSKYGIEEELGGQNITLFQAADKLYDGNSVPQLATVVTAGVLGDGDTHQSFGAIHVRNRNATAYSLNETITGQSTGVTATFKGITAGERDGEFILNVESITASNTNNKFSAGETIQGQGSGATGTHIFTEYTTRVRNEDD
Physico‐chemical
properties
protein length:614 AA
molecular weight: 64320,98860 Da
isoelectric point:4,40334
aromaticity:0,07003
hydropathy:-0,17850

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009188177.1
1 614
Domain Start End Length (AA) Confidence
N-terminal 1 416 416 0,9326
Central domain 417 603 188 0,3597
C-terminal 604 614 10 0,9355
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-416
Central
417-603
C-terminal
604-614

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage P-TIM40
[NCBI] 		1589733 Uroviricota > Caudoviricetes > Pantevenvirales > Libanvirus > Libanvirus ptim40
Host Prochlorococcus marinus str. NATL2A
[NCBI] 		59920 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae > Prochlorococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009188177.1 [NCBI]
Genbank nucleotide accession
NC_028663 [NCBI]
CDS location
range 90215 -> 92059
strand +
CDS
ATGGCAAGAACAGTTCCTGGCTCTGGTGCAATTATTCAGCCTGAATTCAACAGTGTGTTTGGAGTCAGGGCGGTTGCTGTTGTCAATGGCGGGGACGGTTATGATGCAAACGATCCACCAAAGTTAACTGTCCAAAACTGTGGCACCCCTTTGAGGGAAGCAGTATTAAGACCTATAATCCAAGATAATAGAATACTTGCTGTTGAGATCTTAGATCCTGGCGAAGGATATGACCCTCTACGTTTAAAGATTGATTCAACAGATGAAGGTAGTCTTGGTGCAAGAGGCAAAGTTTTTTTAAATGAGACTGGTGGAATAGACTATATCCAGATGACAACTTTGGGTGATAATTATTTTGACGGTACTAGTGCTGTTATTGAGGGTGGCGGTGGATCTGGATCAGAATTAGTCCCTGTCACTGGTGGTGTAACAGGTCTAGTGATTACACGAGAAGGTAGAAACTATGACCTTAATGATGCTAACGTTGTTATCTCTGGTGGTGGCGGTGGTGATGGTGCGACAGGTACTGTTACACCTAACCAATTTGGTAAAGTTACATCTATTACCCTAACAAATCAGGGTGAATTCTTTGAGACTGCACCTATTGTGCAGATCATTGGTGGTGGAGGAAAAGGTGCTGCAGCAAATGCAAGCATTGACCTTGGTGCTATTACCAGTATAGATCTTACTAACAAAGGTAATGGGTATACTAATAGTCCTAAAGTTATATTTGCTAGAGATACCAATCTCATTCGTAAACAACGCAACAGGCAAAGTCTTAATAGTGTTGTTTATAATCTTACTGGTCTCATTTCAGATGTGGCACCTAGTGATAGTACCATTAATGTTGAGACTACGGCAGCGTATCCTGGCTCAGGTAAATTCTTGGTTGGGAAAGAAATCGTCAGATACACTGGTAAAACAGCAACCTCCTTTACTGGACTCGACAGGGGTATCAACTTTAGATTTGATCAGAAAGTTATTCTTGACAATCTACAAGACGATGCTAATGGAGTTTCGCAGTATTCGTTTGAGGTTACCGACCAAGTAAAACGTTTTGTTGCTAGTGCTACTAGTAGGGTTGCCATTGTCTACGACTGGGATCCTGTTGCACATGCTCTGTATCTAACCTTTGAGGTTGACGAGTTAGCATTTATTGATGGTGGTAATTCATCTGATAAGACTGCATCAATTCAATTCGTTGCAGGTAGTGCACAATCTAGTGGCACAGGTGTATCACCACATGTCATTATTGATAGTGCAGGTAACGACATTGTTACTTTTACAGATCCGTTATCAGCAATCCTAAACAAAGCGTTTGAGGATGATGATGAATTAGACGGAGTAGGTGACGGTATTATTGACCTCGTAAATACTGGCACAGAATTTGAGAATGATATCAACCTAGACGGTGGTATCGCATCATCTAAATATGGTATTGAGGAAGAATTAGGTGGACAGAATATCACCTTATTCCAAGCTGCAGACAAGTTATACGACGGAAATAGCGTGCCTCAGCTTGCAACAGTTGTTACCGCAGGTGTTTTGGGTGATGGAGACACCCACCAATCCTTCGGTGCAATTCATGTAAGAAATAGAAATGCAACAGCATACTCTCTCAATGAGACTATAACTGGTCAATCAACTGGTGTTACTGCAACGTTTAAGGGCATTACAGCAGGTGAGAGAGATGGTGAATTCATTCTAAACGTTGAATCTATAACTGCATCAAACACAAATAATAAGTTTAGTGCGGGCGAAACTATACAAGGTCAAGGATCAGGTGCAACAGGCACACACATCTTTACTGAGTATACAACCAGAGTCCGAAATGAGGACGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
37febaa3e2663a73404ebdc1f20e9f2b5162198986c8861439937e08e66a5a4f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5177
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50