Protein

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Genbank accession
YP_009796708.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,69
Protein sequence
MSNLTFIVHLGDGSTQSFPIAAAGETLGYFRAEDIHGYVDGVEVPTFIEPTSPHLLLFVTAPPAGSEVLVRRIMPVEKPYADFERGNNFGPRQINNTFLQQLYLTQELLDGFLPDGYYLKQDMNAGGYRITNLGDAQEPEDAINKKVTDLITSRVEAIEDSMPVGSGSYIVPFYYEAIGGEVEVETFRPFTYCRLSINGINQVPNKAFSFLNGKIYFAESLEEGDVVYAELGSPDVMTILHPLTDARLIATEGQYQFTIQPATTLRVYLNGIRQSPIHSFTWVGTTLILAEPLTEGDVVDIEYMPA
Physico‐chemical
properties
protein length:306 AA
molecular weight: 33911,86940 Da
isoelectric point:4,42818
aromaticity:0,11111
hydropathy:-0,06340

Domains

Domains [InterPro]
DC_0041
STR
1–265
DC_0041
IPR005604
ATT
5–111
IPR005604 DC_0041
YP_009796708.1
1 306
Architecture
ATT
STR
ATT 1-111 | STR 112-303 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009796708.1
1 306
Domain Start End Length (AA) Confidence
N-terminal 1 305 305 0,9964
Central domain 306 305 1 0,3583
C-terminal 306 306 0 0,0000
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-305
Central
306-305
C-terminal
306-306

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VEN
[NCBI] 		2059879 Uroviricota > Caudoviricetes > Autographivirales > Colwellvirinae > Trungvirus
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009796708.1 [NCBI]
Genbank nucleotide accession
NC_047903.1 [NCBI]
CDS location
range 36088 -> 37008
strand +
CDS
ATGAGTAACCTAACGTTCATAGTCCACCTAGGAGATGGGAGCACTCAATCGTTCCCTATCGCCGCAGCGGGTGAAACATTAGGTTACTTCCGCGCAGAAGACATACACGGATATGTTGATGGCGTAGAAGTGCCTACATTTATAGAGCCTACTTCACCTCACTTACTACTCTTTGTAACAGCACCTCCGGCAGGTTCAGAGGTACTAGTGAGGCGTATAATGCCTGTAGAAAAACCTTACGCTGATTTCGAGCGAGGTAATAACTTTGGCCCTAGACAAATAAACAATACCTTCCTACAGCAGTTGTACTTGACACAAGAACTTCTCGATGGTTTCTTACCTGATGGATACTACTTAAAGCAAGATATGAATGCAGGTGGCTATCGCATCACTAATCTAGGAGATGCTCAAGAGCCAGAGGATGCGATTAATAAAAAGGTAACTGACCTAATTACTAGTAGGGTAGAGGCTATTGAGGATTCAATGCCAGTAGGTAGTGGCTCTTACATTGTCCCATTCTACTATGAGGCTATTGGAGGTGAAGTAGAGGTTGAAACGTTCCGCCCTTTCACTTACTGTAGACTAAGTATCAATGGCATTAACCAAGTACCTAATAAGGCATTCAGCTTTTTAAATGGTAAGATTTATTTTGCAGAGTCGCTAGAAGAAGGTGATGTTGTCTATGCAGAGCTTGGTTCACCTGATGTGATGACAATCCTTCATCCGTTGACTGATGCTAGGCTTATTGCCACGGAAGGTCAATACCAGTTCACAATACAACCTGCCACTACTCTGAGAGTGTACCTTAATGGTATCAGGCAATCACCTATACATTCATTCACATGGGTAGGTACTACCTTAATATTAGCAGAGCCTTTAACAGAGGGTGATGTAGTTGATATTGAGTACATGCCCGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d4f69faf79c71db32c95842e8a414b800c5e4d288b517baebd6b507d2455956d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8612
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50