Protein

View in Explore
Genbank accession
QEG05039.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,59
TF
Evidence RBPdetect2
Probability 0,77
Protein sequence
MAIYRQGQASMDAQGYVTGYGTKWREQLTLIRPGATIFFLAQPLQAAVITEVISDTSIRAITTGGAVVQKTNYLILLHDSLTVDGLAQDVAETLRYYQGKESELAGFIEIIKDFDWDKLQKIQEDVKTNADAAAASQKAAKTSENNAKTSATNAENSKKGADTAKAAAESARDAANTAKTGAETARKGAETARDAANTAKAGAESARDQAEEYAKQAAEPYKDLLQPLPDVWIPFNDSLDMITGFSPSYKKIVIGDDEITMPGDKIVKFKRASTATYINKSGLLTDAAIDEPRFEKDGLLIEGQRTNYFVNSNKPESWNPNTGLERGETKTDERGFKYATFKPGKYLGGVGSYTIIAGLTTNNIAVVKGDGVTISFRAKGKNVRFAARFDKGDPLSSVASAIIDCDNLGVATSGVDAKNIVLKNATIDGEWIFAEIVYKVTDESTSIRGVIQVVNKQGEVFDENSFMDLTTPQVEVGSCASSFIITNESPTTRASDMVTLPIKNNLYNLPFTVLVEAHKNWSMTPSAAPRVFGSGGHQSGAEIILAFGSAKGDSDGFPYCDIGKSNRRVNENAKLKKMIIGMRVKSDYNTCCVSNARISSETKTEWRYIVSTATIRIGGQTTTGERHLFGHVRNFRIWHKALTDHQLGEIV
Physico‐chemical
properties
protein length:651 AA
molecular weight: 70650,57970 Da
isoelectric point:6,46245
aromaticity:0,07834
hydropathy:-0,35545

Domains

Domains [InterPro]

No domain annotations available.

Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage JK16
[NCBI] 		2591057 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QEG05039.1 [NCBI]
Genbank nucleotide accession
MK962751.1 [NCBI]
CDS location
range 49793 -> 51748
strand -
CDS
ATGGCGATTTACAGACAAGGCCAAGCGTCTATGGACGCGCAAGGTTATGTAACTGGTTACGGTACAAAATGGCGTGAGCAATTAACCTTGATTCGCCCAGGCGCAACTATTTTCTTTCTTGCTCAACCTTTGCAAGCTGCTGTGATTACAGAAGTGATTAGCGATACAAGCATTCGCGCAATTACTACTGGCGGCGCGGTAGTACAGAAGACAAATTACCTGATCTTGCTTCATGACTCGTTAACGGTTGACGGTCTTGCGCAAGACGTAGCGGAAACGTTGCGTTATTACCAGGGAAAGGAGTCGGAGCTTGCTGGATTTATTGAGATCATCAAGGATTTTGATTGGGATAAGCTACAGAAGATCCAGGAAGACGTAAAGACAAATGCTGACGCAGCCGCAGCAAGCCAGAAGGCAGCTAAAACTAGCGAGAATAACGCAAAGACAAGCGCAACAAATGCAGAGAATAGCAAGAAAGGTGCTGACACTGCAAAGGCTGCCGCTGAATCCGCGCGCGACGCTGCAAACACTGCAAAGACTGGCGCTGAAACTGCAAGAAAAGGCGCTGAAACTGCGCGTGATGCTGCGAACACCGCAAAGGCAGGCGCTGAAAGTGCGCGAGATCAAGCGGAGGAATACGCAAAACAGGCCGCAGAACCTTACAAAGATTTATTGCAGCCTCTACCTGACGTGTGGATACCATTTAATGATTCCCTGGATATGATCACCGGATTCTCGCCGTCATACAAAAAGATTGTCATAGGTGATGATGAGATCACGATGCCAGGTGACAAGATTGTTAAGTTTAAACGTGCATCAACCGCTACTTACATTAATAAGTCTGGGTTGCTTACTGATGCTGCTATTGATGAACCTAGATTTGAAAAGGATGGTCTTTTGATTGAAGGGCAGAGAACAAACTATTTTGTAAATTCAAATAAGCCTGAATCATGGAATCCAAATACAGGATTAGAAAGAGGTGAAACTAAGACTGATGAAAGGGGGTTTAAGTATGCAACATTTAAACCAGGGAAATATTTAGGTGGCGTAGGCTCTTACACTATTATAGCTGGACTTACTACAAATAATATTGCAGTTGTAAAGGGTGATGGAGTTACAATATCTTTTAGGGCTAAGGGGAAAAATGTAAGATTTGCAGCAAGATTTGACAAGGGAGATCCTTTATCTTCTGTTGCTTCTGCTATTATTGATTGCGATAACTTAGGGGTGGCAACTTCTGGAGTTGACGCAAAAAACATAGTGCTAAAGAACGCTACCATAGACGGGGAATGGATTTTTGCAGAAATAGTTTACAAAGTTACTGATGAATCAACTTCCATTAGGGGGGTAATACAGGTCGTTAATAAACAAGGAGAAGTTTTTGATGAAAATAGCTTTATGGATTTAACAACTCCTCAAGTAGAGGTTGGATCTTGCGCTTCATCATTCATTATAACTAATGAAAGTCCGACAACAAGGGCAAGCGATATGGTTACATTGCCAATAAAAAACAACCTTTACAATTTGCCGTTTACAGTGCTTGTGGAAGCTCATAAAAACTGGAGTATGACGCCAAGTGCTGCGCCTCGTGTTTTTGGTTCTGGAGGTCATCAATCTGGTGCGGAAATTATTCTTGCTTTCGGATCTGCCAAGGGCGATAGTGATGGATTCCCTTATTGCGATATAGGTAAATCAAACAGAAGGGTTAACGAGAATGCGAAACTAAAAAAGATGATCATAGGAATGAGAGTAAAGAGTGATTACAATACTTGTTGTGTAAGTAATGCCAGAATATCAAGCGAAACAAAAACGGAATGGAGATATATAGTATCAACGGCTACTATAAGGATTGGCGGACAAACAACTACGGGCGAACGTCATCTTTTCGGGCACGTTAGAAACTTCCGTATATGGCACAAGGCACTAACAGATCATCAATTGGGGGAAATTGTATAA

Tertiary structure

PDB ID
769a94778988c94f7e2e2743c64c28498c51b6c71f179dd8418fd8ad861e66b1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8241
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A quest of great importance - developing a broad spectrum Shigella ssp. and Escherichia coli phage collection Kaczorowska,J., Casey,E., Neve,H., Noben,J.-P., Lugli,G.A., Ventura,M., van Sinderen,D. and Mahony,J. 2019-09-26 — GenBank