Protein

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Genbank accession
WVH05417.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSKVDGSLKALLQGVSQQPPRDRLAGQCTEMINMSADPVAGLSRRAPTDIVGALGASSDVRGFHNFEMRDGGKYLAFFRNGGVRVTDYNAVEYPVTVNADAAPYLQIVGDLACTTVEDQVIVANKSIVTEMLPDKRSFYNAPRGVRGKATLIHVRGGAYGKEYRIFHNGNEVAMYRPPNGTSAAMVNATRTDHIAARLYEALTTGGGEQIDLDGAGSAIRRYGYMVGPTWGVARFADVILIVRANDSWDDYQITTTDDNGNVNMKSMQDSVGDSADLPYIAPHGYLIRVAKETDPLDDVVLEYVVEGRTPGVDIGSGFGLPGFWQETVSADVRTKFNRATMPHILEYNEDNRSFTFRQGNWADRKVGTSRSNPDPSFLGNTINDISTFQGRLVFLAGSFVCMGRTNRFDDFWMGSVSQLVDTDPIDISSTSVEASVMRAAIPNNRDMVVFSQKGQFLIFGRNVITPQNAALVLTTTFEAELKAKPAASGPYVFFATNYGRFTGIREFYSEGTTDANDARLITQHVKEYIVGRASRIIASSNYDMVLVQTDRDRNTVYTYQYIWSSNEKVQSAWSKWVLPFETVYSFFDEEMIYFVMRQQTSAGMEHFLYRMSLDIYAEQQLDYPVFLDERFDVPDCYSSFVLPFNRMAGYELVAIQGDNCPNPGLAVPIQSVTYDAPNNRYIATLKYNMNGGDIVVGKRFYSEYRPTMPMIKDRDGVVIGTGKFRIKKFILSLQNTGHIVGQLMSKYGDGFPVEFQGRLLGSPDNVVGSAATVDEQFDMPFREAPDKADVKFSTDRWLPMTILDIEWIGQYNKSGTRVSQGG
Physico‐chemical
properties
protein length:822 AA
molecular weight: 91466,95500 Da
isoelectric point:5,29730
aromaticity:0,11071
hydropathy:-0,27920

Domains

Domains [InterPro]
IPR058003
TTP
1–817
IPR058003
DC_0058
STR
1–822
DC_0058
WVH05417.1
1 822
Architecture
STR
STR 1-822
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WVH05417.1
1 822
Domain Start End Length (AA) Confidence
N-terminal 1 135 135 0,9922
Central domain 136 343 209 0,3904
C-terminal 344 822 478 0,2572
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-135
Central
136-343
C-terminal
344-822

Taxonomy

  Name Taxonomy ID Lineage
Phage Agrobacterium phage Alfirin
[NCBI] 		3111805 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Agrobacterium sp.
[NCBI] 		361 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WVH05417.1 [NCBI]
Genbank nucleotide accession
OR997969 [NCBI]
CDS location
range 33092 -> 35560
strand +
CDS
ATGAGTAAAGTAGACGGGAGCCTAAAGGCGCTCCTACAGGGCGTGAGCCAACAGCCACCTCGCGACCGTCTGGCCGGGCAATGTACTGAGATGATCAACATGTCCGCAGACCCTGTGGCTGGCCTAAGTCGCCGTGCGCCTACCGATATCGTCGGGGCGCTCGGTGCATCCTCGGACGTACGAGGGTTTCACAATTTTGAAATGCGGGATGGTGGTAAGTATCTTGCCTTCTTCCGTAATGGTGGTGTGCGCGTTACTGACTACAATGCAGTAGAGTACCCCGTTACTGTAAACGCAGATGCTGCGCCATATTTGCAGATCGTTGGCGACCTCGCCTGCACTACTGTAGAGGATCAGGTCATTGTTGCGAACAAGTCCATTGTTACAGAAATGCTTCCTGATAAGCGATCATTCTATAATGCTCCGCGTGGGGTTAGGGGTAAAGCAACACTGATCCATGTCCGTGGTGGTGCGTATGGTAAGGAGTATCGTATCTTCCATAATGGGAATGAGGTTGCCATGTACAGACCACCTAACGGTACGTCTGCTGCAATGGTCAATGCTACCCGTACAGACCACATTGCGGCTAGGCTGTATGAGGCGCTCACTACTGGTGGTGGTGAGCAGATCGACCTTGACGGTGCAGGTTCTGCTATCCGCAGGTACGGCTATATGGTCGGACCTACGTGGGGTGTTGCACGCTTTGCTGACGTAATCCTGATTGTGCGGGCAAATGATTCGTGGGACGACTACCAGATCACGACAACCGACGACAACGGTAATGTAAACATGAAGTCTATGCAGGACAGTGTTGGTGACAGCGCAGACCTTCCATACATCGCACCTCACGGGTACTTGATCCGCGTGGCCAAGGAAACTGACCCTCTTGATGACGTTGTTCTTGAATACGTTGTCGAGGGACGGACACCGGGCGTAGATATCGGATCAGGATTTGGTCTTCCGGGCTTCTGGCAGGAGACTGTTAGTGCAGACGTGCGGACCAAGTTCAACCGAGCCACTATGCCGCATATCCTTGAGTACAATGAGGACAACCGGTCCTTTACATTCAGACAGGGTAATTGGGCAGATCGAAAGGTCGGGACATCAAGGTCTAACCCCGATCCATCGTTCCTCGGTAACACGATCAATGACATCAGCACGTTCCAAGGCCGACTTGTCTTCTTGGCGGGTTCGTTTGTGTGTATGGGTAGGACCAACCGGTTCGATGACTTCTGGATGGGCAGCGTTAGCCAGTTGGTTGACACCGACCCTATCGACATTAGCTCGACCAGTGTTGAAGCCTCAGTCATGCGCGCAGCTATTCCTAACAACCGTGACATGGTTGTGTTCAGTCAGAAGGGACAGTTCCTGATCTTTGGACGAAACGTCATCACACCGCAGAATGCTGCGTTGGTGCTTACCACAACCTTCGAGGCTGAATTGAAGGCCAAACCGGCGGCATCCGGTCCGTACGTATTCTTTGCTACTAACTACGGACGTTTCACAGGCATCCGTGAGTTCTACAGCGAAGGTACCACGGATGCAAATGATGCACGTCTGATCACACAGCACGTAAAGGAGTACATCGTGGGTAGGGCATCGCGTATCATCGCAAGCTCGAACTACGACATGGTTCTTGTACAAACTGATCGGGACCGTAATACGGTCTACACGTACCAGTATATATGGTCTAGTAACGAGAAGGTGCAGTCTGCATGGAGCAAGTGGGTGCTTCCGTTCGAAACGGTGTACAGTTTCTTCGATGAGGAAATGATCTACTTTGTTATGAGACAGCAGACGTCTGCGGGCATGGAGCATTTCCTGTATCGCATGTCTCTGGACATCTATGCGGAACAGCAGCTGGACTATCCAGTATTCTTGGACGAACGGTTTGACGTACCTGATTGCTATTCCAGCTTTGTGCTGCCGTTCAACAGAATGGCGGGTTACGAGTTGGTTGCTATACAGGGTGACAACTGCCCTAACCCAGGGCTTGCTGTACCTATTCAGAGTGTGACGTATGATGCGCCGAATAACCGGTATATCGCTACATTGAAGTACAATATGAATGGTGGGGACATCGTCGTTGGTAAACGCTTCTATAGCGAGTACAGACCGACCATGCCAATGATCAAGGATCGTGACGGTGTGGTGATTGGTACCGGAAAGTTCCGTATCAAGAAGTTCATTCTGTCGCTACAGAACACTGGCCACATTGTTGGTCAGCTTATGAGCAAGTACGGTGACGGTTTCCCTGTGGAGTTCCAAGGACGCCTGCTAGGCTCTCCTGATAACGTCGTAGGTTCGGCTGCTACAGTAGACGAACAGTTCGATATGCCCTTCCGTGAAGCTCCCGACAAAGCTGACGTGAAGTTCAGCACTGACCGCTGGCTACCGATGACCATCTTGGACATCGAGTGGATCGGGCAGTATAACAAGTCGGGTACTCGTGTAAGTCAAGGAGGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0fe7915987f11d08a2603b701ad40e96fbb734b346c7f12d15352e53e6b18578
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2814
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Seed coating with phages for sustainable plant biocontrol of plant pathogens (of the genera of Pseudomonas, Xanthomonas and Agrobacterium) and influence of the seed coat mucilage Erdrich,S.H., Schurr,U., Frunzke,J. and Arsova,B. 2024-06 — GenBank