Protein

View in Explore
Genbank accession
YP_002117683.1 [GenBank]
Protein name
tail fiber protein and host specificity
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,56
Protein sequence
MDFYFTDRSWHLLGIATAGEGPIHIVNDTDDQLISAGARTYSGTILFTPETSAKVKSMAAYGNYVLYKDTRGKAVFMTIMESNHDPLLGETTFTAEDAGIDLINETVGPYKAGKPMSIAEYINFFVTDSGFDIGLNEIPDLKRTLEWTGESDTALARILSVATQFDHAELEFSFQLVGTSVVQRLINIHKRIGTDKRITLYVDKDINKIVTSGNIWDLYTAITPTGGTPEAKDGDTSEQKPITLAGYQWTDPDGRFVLTSDGILLDPVANQQWSRLLSGGARPDAAGAYINRVNTYEATTQASLLQSALSDLKKHNHPVVNYETDIARLPDNVDIGDTVHLADENERLYLSARLLELKSSYSMDTHTATLGDYLIETDQVAAQYRELAEKIKNIPKTVQYWPWVRYADDDKGTNMSAFPANKKYMAVVYSNKSSVPSDNPADYAGKWALIKGADGADGVPGAKGADGRTSYFHTAWANDVSGQSGFTVSGGDGKKYIGTYSDFTQADSTNPADYNWALFKGADGDVGPQGPQGLPGAKGADGRTAYAHFAYANSQDGKTDFSTTAPNRKYIGFYSDFSSGDSTNPSDYNWSLIKGADGADGKDGVPGKPGADGKTPYFHIAYADSGDGRTNFSLDTPGSRKYIGSYTDFTQADSTNPALYSWQLVQGPKGDTGPQGPQGPQGPQGLPGSKDVPYTYIQLGTPTSPKKGDLWWHGTTLNDATALQYYNGSTWIDQSIQQAVLSIKKLQSIEIDSAEINSPTINVPFAHAPIEGGNILSTGKLALNGTSYTIDGTIEDTKGNPNGQRYHTELNPDGLLSYITQTDGTTKMDVSRISMGTLEFTHLASGLGKSATYISSTLDTVKVLQLANNNQMVWQGAMMPENGDVATMSVPLSQTLTGWLIAWSYFQNGKATHNNYAFTLIPKAALVYNTTGANYLRVTLTMREVGTTYKLLFYDDRHIVGNDENATGYPAKAVMTEVYAV
Physico‐chemical
properties
protein length:981 AA
molecular weight: 106434,70230 Da
isoelectric point:4,95360
aromaticity:0,10092
hydropathy:-0,43089

Domains

Domains [InterPro]
DC_0266
STR
1–927
DC_0266
PTHR24637
Unmapped
441–691
PTHR24637
G3DSA:1.20.5.320
STR
519–564
G3DSA:1.20.5.320
YP_002117683.1
1 981
Architecture
STR
STR 1-927 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactobacillus phage Lrm1
[NCBI] 		496874 Uroviricota > Caudoviricetes > Larmunavirus >
Host Lactobacillus rhamnosus strain M1
[NCBI] 		3073602 Thermoplasmatota > Thermoplasmata > Thermoplasmatales > Thermoplasmataceae > Oxyplasma >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_002117683.1 [NCBI]
Genbank nucleotide accession
NC_011104.1 [NCBI]
CDS location
range 15367 -> 18312
strand +
CDS
ATGGATTTTTATTTCACTGATCGTTCTTGGCACTTGCTGGGGATCGCCACAGCTGGTGAGGGGCCGATTCATATTGTCAATGATACTGATGATCAACTGATATCAGCTGGTGCGCGAACGTATTCAGGCACCATTTTATTTACGCCAGAAACCTCAGCTAAGGTCAAATCCATGGCTGCTTATGGCAATTATGTCTTGTACAAAGATACGCGGGGTAAGGCCGTTTTCATGACCATCATGGAATCAAACCATGATCCTTTACTGGGTGAGACCACTTTCACTGCTGAAGATGCCGGCATTGATCTTATCAATGAAACGGTTGGTCCGTACAAAGCCGGTAAACCAATGAGTATTGCTGAATACATTAATTTTTTCGTGACAGATTCCGGATTTGATATTGGCTTGAATGAAATTCCAGACTTGAAGCGAACACTTGAATGGACTGGTGAATCAGATACAGCACTGGCGCGAATTTTGTCGGTGGCAACGCAATTTGACCATGCGGAATTGGAATTCAGTTTTCAATTGGTGGGCACATCGGTGGTGCAGCGGTTGATTAACATTCATAAACGCATTGGGACCGATAAACGGATCACCTTGTATGTTGATAAGGATATCAACAAGATTGTAACTTCTGGTAACATCTGGGATCTGTATACAGCGATTACACCAACTGGTGGCACGCCGGAAGCTAAAGACGGGGACACGAGCGAACAGAAGCCAATTACGTTAGCTGGCTATCAATGGACTGATCCTGATGGTCGGTTTGTATTGACCTCAGATGGCATCTTGCTTGATCCGGTAGCCAACCAGCAGTGGAGTCGGCTATTAAGCGGTGGCGCAAGGCCAGATGCCGCTGGCGCCTATATCAATCGGGTCAACACTTATGAAGCGACCACGCAGGCTTCACTCTTGCAGTCAGCATTGAGCGACCTAAAGAAGCACAATCACCCAGTTGTCAACTATGAAACGGATATAGCGCGTCTGCCGGATAATGTGGATATTGGTGATACAGTGCATTTAGCTGACGAAAATGAGCGGTTATATCTATCGGCAAGATTACTTGAATTGAAGTCCAGTTATTCAATGGATACGCACACGGCGACTTTGGGCGATTATTTGATTGAGACGGATCAAGTTGCCGCTCAGTACCGTGAACTGGCTGAGAAAATCAAGAACATTCCCAAAACAGTGCAGTATTGGCCTTGGGTACGTTATGCCGATGACGACAAAGGTACCAATATGTCGGCATTTCCAGCCAACAAGAAGTACATGGCAGTCGTTTACAGTAACAAGTCATCTGTACCAAGTGACAATCCGGCTGATTACGCCGGCAAGTGGGCATTGATTAAGGGCGCTGATGGTGCTGATGGTGTTCCCGGTGCAAAGGGTGCAGATGGCCGTACAAGCTATTTTCACACCGCTTGGGCGAATGATGTAAGCGGTCAAAGTGGGTTCACGGTATCCGGTGGTGATGGCAAAAAGTATATTGGCACGTACAGCGACTTCACACAAGCCGATAGCACCAATCCAGCTGATTACAACTGGGCGCTTTTTAAGGGGGCTGATGGTGACGTGGGGCCGCAAGGGCCTCAAGGTTTGCCCGGTGCCAAGGGTGCTGATGGTCGTACCGCCTACGCTCACTTTGCTTACGCAAACAGCCAAGACGGCAAGACCGACTTCTCAACAACTGCCCCTAACCGTAAGTACATTGGCTTCTACAGCGACTTTTCATCTGGCGACAGTACGAATCCAAGTGACTATAACTGGTCACTGATTAAAGGTGCGGACGGTGCGGATGGTAAAGACGGGGTGCCGGGTAAACCGGGTGCCGATGGCAAGACACCGTACTTCCATATTGCCTATGCCGATAGCGGTGATGGTAGAACGAACTTTTCGCTGGATACCCCCGGATCTCGCAAGTACATCGGTAGTTATACAGACTTTACGCAGGCCGATAGCACGAATCCAGCACTTTACTCTTGGCAACTGGTGCAAGGACCAAAGGGCGATACTGGTCCTCAAGGCCCTCAAGGTCCGCAAGGGCCTCAAGGTTTGCCCGGAAGCAAGGATGTGCCATACACGTACATTCAGTTGGGAACACCCACAAGCCCCAAGAAAGGCGACCTATGGTGGCATGGGACAACGCTTAACGATGCCACAGCATTACAGTATTACAATGGGTCAACTTGGATTGACCAAAGTATCCAGCAAGCAGTGCTTAGCATCAAAAAGTTGCAATCAATTGAGATTGACAGCGCAGAAATTAATTCTCCAACAATAAACGTGCCTTTCGCTCATGCTCCTATTGAAGGTGGAAACATATTGTCAACTGGCAAGCTGGCTCTGAATGGCACTTCATACACCATTGATGGCACAATTGAAGATACTAAGGGTAATCCAAATGGTCAAAGATATCATACTGAGTTAAACCCCGATGGCTTACTGTCATATATAACACAAACTGACGGTACAACGAAGATGGATGTTAGCAGAATCTCAATGGGGACTCTTGAGTTTACACACTTAGCTAGTGGACTGGGAAAAAGTGCAACCTATATCTCAAGCACTTTAGACACTGTAAAAGTCTTGCAATTAGCAAATAATAACCAGATGGTTTGGCAGGGTGCTATGATGCCCGAGAATGGAGACGTTGCGACAATGTCGGTTCCACTGTCTCAAACACTAACCGGCTGGCTCATTGCTTGGAGTTATTTTCAAAATGGCAAGGCAACGCATAACAACTATGCCTTCACTCTCATACCAAAGGCTGCACTGGTATACAACACAACTGGGGCTAACTATTTGCGGGTAACTCTCACAATGAGAGAAGTTGGTACAACCTACAAACTTTTGTTTTATGACGATAGGCATATTGTTGGCAATGATGAAAACGCAACAGGATATCCAGCTAAAGCGGTTATGACTGAGGTATACGCAGTTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
7dc92ae414e1f1ccf51eba91bac4f89a0aea1590020c8e5b6dbf7f627800e463
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7534
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequence and characteristics of Lrm1, a prophage from industrial Lactobacillus rhamnosus strain M1 Durmaz,E., Miller,M.J., Azcarate-Peril,M.A., Toon,S.P. and Klaenhammer,T.R. 2008 18539811 GenBank