Protein

View in Explore
Genbank accession
AYN56254.1 [GenBank]
Protein name
short tail fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence Phold
Probability 1,00
Protein sequence
MSNNNTYQHVSNESVYVEFDPTGSNFPDTVTNVQAALAAISPSGVNGVPEATTTTPGIIQIATPQEVIDGLDNSKAVTPATLNARLQYPNATETQYGLTRYATEDEAVAGVIDDASITPLKLNQKIDNVFQTKVSTEATNGVIKISTSAAALAGSDDTTAMTPLKTQQLAIKLISQIAPNNSDATESITGVVRLATVAQAQQGTLREGYAISPYTFMNSVASETNKGVVKLGTQTEVNSNNSSVVVTGATLNGRGATTSLRGVVRLTTQAGSQSGGDGSSALAWNADVIHQRGGQTINGTLRINNTLTVGSGGANITGNVNMTGGYIQGNRIVTQNELDRILPVGAITMWAADSLPSSDWRFCHGGTVSASECPVYASRIGTRYGGSSSNPGLPDMRGLFVRGSGRGNHLTNPNVNGNDQFGKPRLAVGCTGGYVGEVQKQQMSYHKHAGGFGEHDDSGAFGNTRRSNFVGTRKGLDWDNRSYFTNDGYEIDPASQRNSRYTMNRPELIGNETRPWNISLNYIIKVK
Physico‐chemical
properties
protein length:527 AA
molecular weight: 55768,96360 Da
isoelectric point:6,40714
aromaticity:0,06072
hydropathy:-0,39677

Domains

Domains [InterPro]
SSF69349
247–327
SSF69349 IPR037053 IPR044916
IPR015173
247–327
IPR015173 SSF88874
G3DSA:2.10.280.10
247–287
G3DSA:2.10.280.10 G3DSA:2.160.30.10 IPR011083 IPR027448
AYN56254.1
1 527
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage p000v
[NCBI] 		2479933 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AYN56254.1 [NCBI]
Genbank nucleotide accession
MK047717.1 [NCBI]
CDS location
range 55960 -> 57543
strand -
CDS
ATGAGTAATAACAATACATACCAACACGTTTCAAACGAATCCGTTTACGTTGAATTCGACCCTACTGGGTCGAATTTTCCAGATACAGTCACTAATGTCCAAGCCGCATTAGCTGCTATTTCTCCTTCAGGTGTTAATGGTGTACCAGAAGCAACAACTACTACACCAGGAATTATTCAAATAGCTACTCCTCAAGAAGTTATTGATGGATTAGATAATAGTAAAGCTGTTACTCCAGCCACACTTAATGCTCGACTACAATATCCTAATGCGACAGAAACTCAATATGGTTTAACTCGTTATGCTACTGAAGATGAAGCAGTAGCCGGAGTAATTGACGATGCATCAATTACTCCGCTTAAATTGAATCAAAAAATAGACAATGTATTTCAGACAAAAGTGTCAACAGAAGCAACAAATGGTGTAATTAAAATTTCAACTTCTGCTGCGGCATTAGCTGGTTCTGACGATACAACGGCAATGACTCCGTTAAAAACGCAACAATTAGCAATTAAACTTATTTCACAAATTGCTCCAAATAATAGTGACGCCACCGAATCTATTACCGGTGTTGTTCGTTTAGCTACAGTTGCACAAGCACAACAAGGCACCCTGCGTGAAGGCTATGCAATTTCACCTTATACCTTTATGAATTCAGTAGCATCAGAAACTAATAAAGGCGTCGTTAAACTAGGGACACAGACTGAAGTAAATAGTAACAACTCTTCAGTTGTAGTGACCGGCGCAACATTAAATGGTCGCGGCGCTACAACTTCTTTACGTGGAGTTGTTCGTTTAACTACACAAGCAGGTAGTCAATCAGGTGGTGATGGTTCTTCTGCCCTTGCTTGGAATGCTGATGTTATCCACCAACGAGGCGGACAAACTATTAATGGCACGCTTCGCATTAATAATACGTTGACGGTTGGTTCTGGTGGTGCTAATATAACTGGTAATGTCAATATGACCGGTGGTTATATTCAAGGCAATCGTATTGTGACTCAAAATGAATTAGACCGAATTCTTCCAGTCGGTGCTATTACAATGTGGGCAGCAGATAGTTTACCGAGTTCGGACTGGCGCTTCTGTCACGGCGGGACCGTTTCTGCTTCAGAATGTCCGGTATATGCTTCCAGAATTGGGACACGATATGGTGGTAGTTCTTCTAACCCAGGCTTGCCTGATATGCGTGGATTATTTGTTCGCGGCTCAGGTCGTGGTAACCATTTAACTAACCCTAATGTTAATGGTAATGACCAATTTGGTAAGCCTCGTCTGGCGGTAGGTTGTACTGGTGGATATGTCGGTGAAGTGCAAAAACAACAGATGTCATATCATAAGCATGCTGGTGGTTTTGGCGAACATGATGATTCCGGTGCATTTGGTAATACTCGTCGTTCAAACTTTGTTGGTACTCGTAAAGGACTTGACTGGGATAACCGTTCATATTTTACTAACGATGGATATGAAATTGATCCAGCGTCTCAACGTAACTCTAGATATACCATGAATCGTCCAGAATTAATTGGAAATGAAACTCGCCCATGGAATATTTCTTTAAACTATATCATTAAGGTAAAATAA

Tertiary structure

PDB ID
b35bcc6c5bda8f9189377470738763f19d175c98445b390f96a667542adee0a9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6942
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Whole-genome sequence of phages p000v and p000y infecting the bacterial pathogen Shigatoxigenic Escherichia coli Howard-Varona,C., Vik,D.R., Solonenko,N.E., Li,Y.-F., Gazitua,M.C., Hobbs,Z., Honaker,R.W., Kinkhabwala,A.A. and Sullivan,M.B. 2018-11-21 — GenBank