Protein

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Genbank accession
YP_009152176.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence GenBank
Probability 1,00
TSP
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,67
TSP
Evidence UniProt/TrEMBL
Probability 1,00
Protein sequence
MFSQGGRGSTGILTNKQAIARKFGVKQSEVVYFSEGVDLGGYKVIYDKTTQRAYSLPTDISSGTTAISLGTDAVLVHSQGSVDLGELGAQREEFITVPGSFTTGTTITTKNEVLTSISGLYRWDGELPKVVEPDSTPEKSGGIHVGAWVPVGTLATHNPIVDNIALQHKVVHDIDYSGIFEGAENLSQGFCICETPDGLRMFIHQPVTGGVRIVETTFNPEGDNENPTVISFSPVFEDIGHQSIGAIYENGGVILYLPTEDSKGINIINWKGRDTTTSNITRVEVFKSDFYNNDEIITLALSESGKTLVIETIGEPVHVQYNRDDHRIIYVFDRVSLTFKYRFHINNIPMVAQSFQGMASDDQYLYVYYGYNGVFLTHRIVIYNLFTGEIIRWFNVDGVRAKYGREKMLGNAELGYPCLQEPEGLALYKGKLYLLDMDFWYATADVVLFEGKYFAARTANFSGYSPVNPTYWTPTTYGTSNASQWDSTKTYTRGTRTKRTKAIVSVEPYDGTGYSIFGVAYPDSHASLFLCPNAVNIALSPNEDFQVAAYEQNLRSHRPLFEVRKEAPDTDTSAAVFRLFGDAFRTGEYTGRFVQWKHRLNAVHDCLEIRADVNLLSGGGINLYSMNDTQSAGRTRLYCTDGSETWSVLLSPVSPSFHPDQDKAMNLGSSPNRWNVAYLQGVNIKSDDKTQKRMTISTTLKAGAFQVSTSGNLGIYDDSADAYVIAARSNGTAFMQMDTDIKGNFLPSTNNTYNIGSSSKAFSNAYFNNSPTVVSDATLKDEPRDINSSEIAAFAEIARLPSVWRWLQRIEEEGDDARLHSGPTVQAAIDIMTKHGLDWRKYSAFCLDSWDAVEAEYEEIPAEYEEVPVQPAIYSDEGELLSGTTLVLVRESQKVLVRPALEAGTRYRFRKEELLWWCLRATINQIDSLAETVNVLVSRIDALENK
Physico‐chemical
properties
protein length:946 AA
molecular weight: 105131,32090 Da
isoelectric point:5,07910
aromaticity:0,10782
hydropathy:-0,29049

Domains

Domains [InterPro]
G3DSA:3.30.2020.50
ATT
1–93
G3DSA:3.30.2020.50 G3DSA:2.10.10.80 SSF63825 IPR036388
DC_0071
STR
1–867
DC_0071 Coil
IPR040775
RBD
91–152
IPR040775 IPR030392
IPR030392
CHP
775–946
IPR030392
cd10144
CHP
775–925
cd10144
YP_009152176.1
1 946
Architecture
ATT
STR
RBD
ATT 1-160 | STR 161-867 | RBD 868-946
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009152176.1
1 946
Domain Start End Length (AA) Confidence
N-terminal 1 168 168 0,9914
Central domain 169 418 251 0,8856
C-terminal 419 946 527 0,8543
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-168
Central
169-418
C-terminal
419-946

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage Pollock
[NCBI] 		1540097 Uroviricota > Caudoviricetes > Schitoviridae > Pollockvirus > Pollockvirus pollock
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009152176.1 [NCBI]
Genbank nucleotide accession
NC_027381.1 [NCBI]
CDS location
range 54951 -> 57791
strand -
CDS
ATGTTCAGCCAAGGTGGTAGAGGTTCAACTGGAATCTTAACCAACAAACAAGCTATTGCTCGTAAGTTTGGTGTTAAACAGAGTGAAGTAGTCTACTTCTCAGAAGGAGTAGATTTAGGTGGTTATAAGGTTATTTATGATAAGACAACACAAAGAGCTTATTCCTTACCTACTGACATTTCTTCTGGTACTACTGCCATCAGTCTTGGTACTGATGCTGTACTTGTACATTCACAAGGTTCTGTAGATTTAGGTGAATTAGGGGCACAACGAGAAGAGTTTATAACTGTACCTGGTTCATTTACTACAGGAACTACTATAACTACTAAGAATGAAGTACTTACAAGTATTTCTGGTTTATATAGATGGGATGGAGAACTACCTAAAGTAGTTGAACCAGATTCTACTCCAGAAAAAAGTGGAGGTATTCATGTTGGTGCATGGGTTCCTGTAGGAACTTTAGCAACACATAACCCTATTGTTGATAATATAGCTCTACAACATAAAGTTGTACATGATATTGATTATTCAGGAATTTTTGAAGGTGCAGAAAATTTAAGTCAGGGATTCTGTATTTGTGAAACTCCAGATGGTTTACGTATGTTTATCCATCAACCAGTAACAGGTGGAGTTAGAATTGTTGAAACAACATTTAATCCAGAAGGGGACAATGAAAACCCTACTGTTATTTCTTTCTCTCCAGTATTTGAAGATATAGGTCATCAGAGTATCGGGGCTATATATGAGAATGGTGGTGTAATTTTGTATTTACCTACTGAAGACAGTAAAGGTATCAATATAATTAATTGGAAAGGAAGAGATACTACTACATCAAATATTACTAGAGTAGAAGTATTTAAATCAGACTTCTATAACAACGATGAAATTATCACACTTGCATTATCTGAAAGTGGTAAAACATTAGTTATTGAAACTATAGGTGAGCCTGTTCACGTACAGTATAACAGAGATGACCACCGTATAATTTATGTATTTGACCGTGTTTCTTTAACATTTAAATATAGATTTCATATAAATAATATCCCTATGGTGGCTCAATCTTTCCAAGGGATGGCAAGTGATGACCAATATCTATATGTATATTATGGATACAATGGTGTTTTCTTAACCCACCGTATTGTTATTTATAATTTATTCACAGGTGAGATTATTAGATGGTTTAATGTAGATGGTGTGCGTGCTAAGTATGGACGTGAGAAAATGCTTGGTAATGCAGAATTAGGTTATCCATGTTTACAAGAACCAGAAGGATTAGCTTTATATAAAGGTAAACTATATCTGCTTGATATGGATTTTTGGTATGCCACAGCAGATGTTGTTTTATTTGAAGGAAAATACTTTGCTGCAAGAACAGCTAATTTTTCCGGGTATTCTCCAGTAAACCCAACTTATTGGACACCTACTACTTATGGAACAAGTAATGCAAGTCAATGGGATTCAACAAAGACTTATACTCGTGGTACAAGAACAAAGCGTACTAAAGCTATTGTCTCTGTAGAACCTTATGATGGTACTGGGTATTCAATTTTTGGTGTAGCTTATCCTGATAGTCATGCCAGTCTTTTTCTATGTCCCAATGCTGTAAATATTGCCCTGTCACCCAATGAAGACTTCCAGGTGGCAGCCTATGAGCAGAATCTGCGCTCGCATCGCCCGTTATTTGAGGTCAGAAAGGAGGCTCCGGATACAGACACTTCTGCTGCTGTTTTTCGTTTGTTCGGGGATGCGTTCCGAACCGGAGAATACACAGGCCGCTTCGTTCAGTGGAAACACCGCCTGAACGCCGTGCACGATTGTCTGGAAATACGCGCTGACGTGAATTTGTTGAGCGGTGGCGGGATTAACCTTTACTCAATGAACGATACTCAGTCGGCGGGGCGCACAAGGCTTTATTGTACCGATGGCAGCGAGACCTGGTCTGTATTATTGAGTCCGGTCTCGCCGTCATTTCATCCCGACCAGGACAAGGCAATGAATCTGGGGTCATCGCCAAATCGCTGGAATGTGGCATACCTGCAGGGCGTGAATATTAAATCGGATGACAAAACCCAGAAGCGCATGACTATCAGTACCACGCTGAAGGCGGGAGCTTTCCAGGTATCAACATCCGGGAATCTGGGTATTTATGACGATTCTGCTGACGCTTATGTAATTGCAGCCCGTAGTAACGGCACTGCATTCATGCAGATGGATACAGATATTAAAGGTAACTTCTTACCTTCAACTAACAATACCTATAATATTGGTTCTTCTAGTAAAGCATTCAGTAATGCTTACTTTAATAATTCACCGACTGTTGTATCTGATGCAACATTGAAAGATGAACCAAGAGATATCAATTCATCAGAGATTGCTGCATTTGCAGAAATAGCTCGTTTACCTTCTGTATGGAGATGGTTACAACGAATTGAAGAAGAAGGTGATGATGCCAGATTACATTCTGGTCCTACTGTGCAAGCAGCAATTGATATCATGACTAAACATGGACTGGATTGGAGAAAATACAGTGCTTTCTGTTTAGATTCTTGGGATGCTGTTGAAGCAGAATATGAAGAGATTCCAGCAGAGTATGAAGAAGTACCTGTACAACCTGCTATCTACTCTGATGAAGGAGAGCTATTAAGTGGTACAACCTTAGTACTTGTAAGAGAATCTCAAAAAGTTCTAGTACGTCCTGCATTAGAAGCAGGTACTCGATATCGCTTTAGAAAAGAAGAACTTCTTTGGTGGTGTCTGAGAGCTACTATTAATCAAATTGATTCATTAGCAGAAACTGTTAATGTATTGGTTAGTAGAATAGATGCACTTGAGAATAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2a2864363012cf4727740dd2d5683fe21eb9e300099fbc2e3a01cb5965da1f64
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5757
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Enterotoxigenic Escherichia coli N4-Like Podophage Pollock Patel,R.S., Lessor,L.E., Hernandez,A.C. and Kuty Everett,G.F. 2015 25635029 GenBank