Protein

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UniProt accession
C1KFM1 [UniProt]
Protein name
Neck protein
RBP type
TF
Evidence RBPdetect
Probability 0,89
Protein sequence
MDDQDMQNGYPYGENNPKRVDLDKIDSFTPDLYGLTPSAIKGYMVGMDIKDPETGESLPDSWYWDIIESAIKKAEDVLDIVILPRAIAREHHDYYDSEYNSYAFTTLYKKPIIQVLKFKLQMNNFNVFNYPPEWWKIYPLAGQIQIFPSPLMQATGMGGSGSSMSLGFMSAPVVVANSFAFNGASGNYAPQAFDIDYVAGFLPPKRYAVTQDFEFPAELRQLVIKYAMKEALQQWGRLIIGAGIAGRSFSIDGISESIETTQSAMYTGSRADIDIIDQDISDLLDALRAKFQPQFTEL
Physico‐chemical
properties
protein length:298 AA
molecular weight: 33469,49350 Da
isoelectric point:4,50917
aromaticity:0,12752
hydropathy:-0,23221

Domains

Domains [InterPro]

No domain annotations available.

Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactobacillus phage Lb338-1
[NCBI] 		2892342 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Tertiary structure

PDB ID
c6de1607d0efb35072326eb124f50eb9184e8f8c5d77bc29cfd7ae77f1ccdcc4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7366
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome of a virulent bacteriophage Lb338-1 that lyses the probiotic Lactobacillus paracasei cheese strain. Alemayehu D, Ross RP, O'Sullivan O, Coffey A, Stanton C, Fitzgerald GF, McAuliffe O 2009-12-01 19712732 PubMed
Genome of a virulent bacteriophage Lb338-1 that lyses the probiotic Lactobacillus paracasei cheese strain Debebe Alemayehu, R. Paul Ross, Orla O'Sullivan, Aidan Coffey, Catherine Stanton, Gerald F. Fitzgerald, Olivia McAuliffe 2009-12 10.1016/j.gene.2009.08.008 DOI