Protein

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Genbank accession
QNR51707.1 [GenBank]
Protein name
putative virion structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,64
Protein sequence
MAKTIRESPLWDEIQDVMKNGSKAIQYHWTAVLRAKEIEYDTICVLSVDNDRNFHGRYADHMFVEVAVQPGTFYADIFPHNDTLEIILTRTPKFIAGSTETPDEAPMVQTYRASIVNPKNPLVTMKQDFGDNKEAMNLSDVARVTFQVFDHALEQLMMKTVNQGATRSRPGGLARWILTNLSKDIEVDDEYKITGVSIVDYSNQEPRPLVQVPAGTRFVDAPLYLHEHQGGIYSAGMGYYLHGRAWYMYPSYDVTRFNTARPKLTVIAVPADKLPGVERTFMRDNTHTTIIATGGIEYLDPTEGQKLSDGNGVRYNDSRNVMEAYGEVEGNKLKVDNSLNTTEYVTEQRENGLNNVQTGARKFTSNPFVESSLLAKRNGAYVQVVWENSSVDMIEPNMPVRYMYVQGGDVKEAMGTLAQAHMIVEPTQQGIVFATHVQKTILTIFIGSKLDWAQVTNE
Physico‐chemical
properties
protein length:458 AA
molecular weight: 51543,59200 Da
isoelectric point:5,39916
aromaticity:0,09170
hydropathy:-0,39607

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QNR51707.1
1 458
Domain Start End Length (AA) Confidence
N-terminal 1 286 286 0,6897
Central domain 287 447 162 0,0744
C-terminal 448 458 10 0,4274
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-286
Central
287-447
C-terminal
448-458

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage Xoo-sp14
[NCBI] 		2769337 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Xanthomonas oryzae pv. oryzae
[NCBI] 		64187 Pseudomonadota > Gammaproteobacteria > Lysobacterales > Lysobacteraceae > Xanthomonas > Xanthomonas oryzae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QNR51707.1 [NCBI]
Genbank nucleotide accession
MT939492 [NCBI]
CDS location
range 18871 -> 20247
strand +
CDS
ATGGCCAAGACAATCCGCGAATCCCCGCTCTGGGATGAGATTCAGGATGTCATGAAGAACGGGTCGAAAGCTATCCAGTATCACTGGACGGCTGTGCTGCGCGCCAAGGAGATTGAGTACGACACCATCTGTGTGCTCTCGGTTGACAACGACCGAAACTTCCATGGGCGCTACGCCGACCACATGTTTGTCGAGGTGGCTGTGCAACCCGGCACGTTCTACGCTGACATCTTCCCGCACAACGACACGCTGGAGATCATCCTCACCCGCACGCCCAAGTTCATTGCCGGTTCCACAGAAACCCCCGACGAAGCCCCCATGGTGCAAACCTACCGGGCCAGCATCGTCAATCCGAAGAACCCCTTGGTCACCATGAAGCAGGACTTTGGCGACAACAAGGAGGCGATGAATCTGTCTGACGTGGCTCGCGTTACGTTCCAGGTCTTTGACCACGCGTTGGAACAGCTGATGATGAAGACAGTCAATCAGGGCGCGACTCGTTCACGCCCCGGTGGGTTGGCTCGTTGGATTCTCACCAATCTCAGTAAGGACATTGAGGTTGATGACGAATACAAGATCACCGGTGTGAGCATCGTCGACTATTCCAATCAGGAGCCCAGACCTCTGGTTCAGGTTCCTGCCGGAACGCGCTTTGTGGATGCGCCGCTGTATCTGCACGAACACCAGGGCGGGATCTACTCCGCCGGCATGGGCTACTACCTGCATGGTCGCGCATGGTACATGTATCCCTCCTACGACGTTACGCGCTTCAACACGGCCCGCCCGAAGCTTACGGTCATCGCAGTACCTGCCGACAAGCTGCCGGGCGTGGAGCGCACGTTCATGCGCGATAACACGCACACCACCATCATCGCAACCGGTGGCATCGAGTATCTAGACCCGACGGAAGGTCAGAAGCTCTCTGACGGTAACGGCGTCCGCTACAATGACAGCCGGAACGTCATGGAAGCTTATGGCGAAGTGGAGGGGAACAAGCTCAAAGTCGACAACTCGCTCAACACGACCGAGTACGTCACCGAGCAGCGTGAGAATGGACTGAACAACGTCCAGACTGGCGCGCGTAAGTTCACCTCCAATCCGTTCGTCGAATCCTCGCTGCTGGCCAAGCGCAATGGTGCGTATGTGCAGGTCGTCTGGGAGAATAGCTCGGTTGACATGATCGAGCCGAACATGCCGGTACGCTACATGTACGTCCAGGGTGGTGACGTCAAGGAAGCCATGGGTACGCTGGCACAGGCGCACATGATCGTCGAACCCACCCAGCAGGGCATCGTCTTCGCCACGCACGTCCAGAAAACCATCCTGACGATCTTCATCGGGTCGAAGCTGGACTGGGCTCAGGTCACCAATGAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
af5fed4e0945be9a09d78b70157e207b4492cd1735c8a161b1e5fe97443e3d59
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6081
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and Sequence analysis of novel giant bacteriophage, Xoo-sp14 Nazir,A., Dong,Z., Liu,J., Tong,Y. and Peng,D. 2020-11-25 — GenBank