Protein

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UniProt accession
L0L8C8 [UniProt]
Protein name
Pectin lyase-like protein
RBP type
TSP
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MESSKHVYFIDFEKHGIKSDGTAARETTDGFTYALNDAVNKGYKTVYVPKGDYLINGVGEDRMPEYGGGIQFPSNIEVIFHKKAIFKVEPNSSTGYACFNLENVDNVILRGGCVVGERFEHDYDMNVSKFRKTHEWGYGVHIRGSRNILVEDMHISDCTGDCIWVPAHGMMNWGDTVYIPSESITIRKCRTERGRRNNIATDGCLGLLIDDCDIIEAGGDTIGPQLGIDLEGFAEDGIKYGHPYEINVVNNRIRNNGRGSLNINVSAKVHASNNFSDDVFSYGYSSDVSICNNKIINDSGKVRKYGIDSIRKSSTETGNRAIITGNHIIGFEIGICARGLGVKIANNYLKDISSIGIYPYLAEEVSVSDNIVDSNCLHVWVRESKDVKISDNKTKGADNDFAYRVESSSDVIISDSKSQANGGIQVIRSRKVTLKDNDLTLTGADYGIYWDKQSEVEVLHNTVRDAAMIAIAGNSNLYPSIVKGNNIKDCTYLVGLYMNGGRDHVIWDNDVSFKGVGSSNGGYGVQLIATTNAWLMDNKVRVSNGRTLSSAYESQSSYKTLYVNNAMQIGKINPHESDYVKGTLELPFPL
Physico‐chemical
properties
protein length:590 AA
molecular weight: 65078,07650 Da
isoelectric point:5,72360
aromaticity:0,08814
hydropathy:-0,36508

Domains

Domains [InterPro]
IPR012334
STR
13–332
IPR012334 IPR007742
IPR011050
STR
28–377
IPR011050 IPR011050
IPR039448
ENZ
129–274
IPR039448 IPR006626 IPR006626 DC_0453
IPR006626
Unmapped
145–167
IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626
IPR012334
STR
393–580
IPR012334
L0L8C8
1 590
Architecture
STR
STR 13-585 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
L0L8C8
1 590
Domain Start End Length (AA) Confidence
N-terminal 1 23 23 0,8419
Central domain 24 579 557 0,9949
C-terminal 580 590 10 0,3289
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-23
Central
24-579
C-terminal
580-590

Taxonomy

  Name Taxonomy ID Lineage
Phage Bacillus phage phiAGATE
[NCBI] 		1204533 Uroviricota > Caudoviricetes > Herelleviridae > Agatevirus > Agatevirus agate
Host Bacillus pumilus
[NCBI] 		1408 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGB62649.1 [NCBI]
Genbank nucleotide accession
JX238501 [NCBI]
CDS location
range 144213 -> 145985
strand +
CDS
TTGGAGAGTAGCAAACACGTTTACTTCATCGACTTTGAAAAGCACGGTATCAAATCAGACGGAACAGCAGCAAGAGAAACAACAGACGGATTCACATATGCACTAAACGATGCGGTGAACAAAGGTTACAAAACAGTGTATGTCCCTAAAGGTGATTATCTTATCAACGGAGTCGGAGAAGACAGAATGCCTGAGTATGGTGGAGGTATTCAATTCCCTTCTAATATTGAAGTAATTTTTCACAAAAAGGCAATTTTCAAAGTAGAACCTAACAGTTCGACCGGGTATGCCTGCTTCAACTTGGAGAATGTCGACAATGTCATCCTGAGAGGTGGCTGCGTGGTCGGAGAGCGCTTTGAACATGATTATGATATGAATGTATCAAAGTTCCGTAAAACCCATGAGTGGGGCTATGGAGTGCATATACGAGGAAGCAGGAATATTCTCGTCGAAGACATGCACATCTCAGACTGTACTGGAGATTGTATATGGGTTCCAGCTCACGGTATGATGAACTGGGGAGACACAGTATATATCCCTTCAGAGTCGATCACTATTAGAAAGTGTCGTACTGAAAGAGGACGCAGAAACAACATCGCTACAGATGGGTGTCTTGGTCTCCTTATTGACGACTGTGACATCATCGAAGCTGGTGGAGATACAATAGGACCACAGCTAGGAATTGACTTAGAAGGTTTTGCAGAGGACGGGATTAAGTACGGACACCCTTATGAAATTAATGTCGTCAACAACCGCATCCGAAACAACGGACGAGGTTCCCTTAACATAAATGTATCTGCGAAGGTACATGCGTCCAACAACTTCTCAGATGATGTCTTCAGCTATGGATACTCTTCAGACGTTTCCATCTGTAACAACAAGATCATTAACGACTCAGGAAAAGTAAGAAAATATGGTATCGACTCCATTCGTAAGTCCAGCACCGAGACAGGTAACCGAGCAATTATCACAGGTAACCACATCATCGGTTTTGAGATTGGTATATGTGCTCGTGGGCTAGGAGTAAAAATAGCTAATAACTACCTAAAAGATATATCTTCTATAGGTATTTATCCCTACTTAGCCGAGGAAGTTAGCGTCTCAGATAACATTGTCGATAGTAATTGCTTACACGTATGGGTACGTGAGTCTAAAGATGTAAAAATCAGCGACAACAAAACAAAAGGCGCAGATAATGATTTCGCATACCGAGTTGAATCTTCTTCTGATGTTATCATCTCAGATAGTAAGTCACAAGCTAACGGCGGAATCCAAGTTATCCGTTCCCGTAAAGTCACCCTAAAGGATAACGACCTAACCCTTACTGGAGCAGACTACGGCATTTACTGGGACAAGCAGTCTGAAGTGGAAGTATTACACAACACAGTAAGAGACGCAGCTATGATCGCTATCGCAGGTAACTCCAATCTATACCCAAGTATTGTTAAAGGAAATAACATCAAAGACTGTACGTACTTAGTAGGCTTGTATATGAACGGCGGTAGAGATCATGTTATATGGGATAACGACGTATCTTTCAAAGGCGTAGGCTCATCAAATGGAGGTTACGGAGTCCAACTAATCGCAACAACAAATGCATGGCTCATGGATAACAAAGTACGTGTTTCTAACGGACGTACATTAAGTAGCGCTTACGAGTCACAGAGCTCGTATAAAACACTTTATGTTAACAACGCAATGCAGATAGGTAAAATTAATCCCCACGAGAGTGATTACGTAAAGGGAACACTTGAACTACCGTTTCCCTTATAG

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0044423 virion component Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0016829 lyase activity Molecular Function IEA:UniProtKB-KW (UniProt)
GO:0051701 biological process involved in interaction with host Biological Process IEA:UniProtKB-ARBA (UniProt)
GO:0019058 viral life cycle Biological Process IEA:UniProtKB-ARBA (UniProt)

Tertiary structure

PDB ID
e303861e11fbfc66ddb191acc9f58d55014316cf06ec2dac3cd6b5ca73749ed2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8893
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50