Protein

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Genbank accession
AGH26970.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,59
TF
Evidence RBPdetect2
Probability 0,54
Protein sequence
MATHDYVLDNATGANFRADINLALAAIVSNNSSATEPSTKYAYQWWADTNDGVLKIRNSANDGWVTLLQLDGTLTLEDGSNSAPALGFRDDLNTGIFSSAADTLDVTCGGTTRGSFSASGLAVTGSVTATTFVGNVDAVDGDFDGTLEADAITVAGTALSTVIAGTTLTQAAQTNITSLGTLTGLTVGGDVTFDGATTGRDIVFDRSDNALEFADNAKAKFGSSEELEIYYDGTNPIFYAGTKTVRVVADNIHFEAGDFGDEFIRCNHDASVDLYYDNSKKFETTSSGINVTGQADVDSINCTGELDLTGHLDLNSDSSRIKLGAGDDFQLYHDGSNNYIFTNNGDIIVQTDGDDIQLLASDDVIIKVQGGLETAINCIGDGAVELYHNNSKKLETNSSGVNVIGSLTVDGSAISGGGGKILQVVQQTKTDTATHSVNINQGAANFSLIMSKSITPANSSNKILVQFSISGNVEANGTHVDFVLRKTVGSTVTHPILGDSASGYTSITTGFRSGGGNQHNVGQCIYQFLDDAGTTSAITYGVAVATEGATTYRVNASGGDLSSQSWSSRQASTIVLMEVSA
Physico‐chemical
properties
protein length:581 AA
molecular weight: 60470,23240 Da
isoelectric point:4,26363
aromaticity:0,07057
hydropathy:-0,11394

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGH26970.1
1 581
Domain Start End Length (AA) Confidence
N-terminal 1 11 11 0,9409
Central domain 12 210 200 0,0988
C-terminal 211 581 370 0,9263
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-11
Central
12-210
C-terminal
211-581

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage MED4-184
[NCBI] 		889955 No lineage information
Host Prochlorococcus
[NCBI] 		1218 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH26970.1 [NCBI]
Genbank nucleotide accession
JF974286.1 [NCBI]
CDS location
range 589 -> 2334
strand +
CDS
ATGGCAACGCATGATTACGTTTTAGATAATGCCACAGGTGCTAATTTTCGTGCAGATATAAATTTAGCCCTTGCAGCTATCGTAAGTAATAACTCATCAGCAACTGAACCAAGTACAAAATATGCTTATCAATGGTGGGCGGATACTAATGATGGTGTTTTAAAAATAAGAAATAGTGCAAATGATGGCTGGGTTACTTTATTACAACTTGATGGAACTTTAACCCTTGAAGATGGCTCAAACTCCGCACCCGCACTAGGATTTCGGGACGATTTAAATACTGGTATTTTTTCAAGTGCTGCTGACACTTTAGACGTTACTTGTGGAGGAACAACAAGAGGTAGTTTTAGTGCTTCTGGTTTGGCAGTTACAGGAAGTGTTACTGCTACAACCTTTGTTGGAAATGTAGATGCTGTCGATGGAGACTTTGATGGAACTCTTGAAGCTGATGCTATAACTGTTGCTGGAACGGCTTTATCAACTGTTATTGCGGGAACTACTCTTACACAAGCAGCACAAACAAATATTACTTCTCTAGGTACTCTTACAGGATTGACTGTTGGTGGGGATGTAACTTTTGATGGTGCTACTACTGGCAGAGATATTGTTTTTGACAGATCAGATAACGCATTAGAGTTTGCTGATAATGCTAAAGCTAAATTTGGTTCTTCTGAAGAGCTTGAAATTTATTATGATGGAACGAATCCTATCTTTTACGCTGGCACAAAAACTGTAAGAGTAGTTGCTGACAATATACATTTTGAGGCTGGAGATTTTGGAGATGAATTTATTAGATGTAATCATGATGCATCAGTTGATCTCTATTATGACAACAGTAAAAAATTTGAGACAACCAGTTCTGGAATAAATGTTACTGGACAAGCTGATGTTGATAGTATTAATTGTACTGGTGAGTTAGATTTAACTGGACACCTTGATTTAAACTCTGACAGCTCCAGAATTAAACTCGGAGCTGGGGATGATTTTCAGCTATATCACGATGGTAGTAATAACTACATTTTTACTAACAATGGCGATATAATTGTGCAGACTGATGGTGATGACATTCAGTTATTAGCTAGTGATGACGTGATAATAAAAGTTCAAGGAGGTCTTGAAACTGCAATCAATTGTATTGGTGACGGTGCAGTAGAGCTATATCATAACAACAGTAAAAAATTAGAAACCAACAGTTCTGGCGTGAATGTTATTGGGAGCTTAACCGTTGATGGTTCAGCTATAAGTGGTGGTGGTGGAAAAATTTTACAAGTAGTTCAACAAACTAAAACTGACACTGCCACTCATTCTGTAAATATAAATCAAGGTGCAGCAAATTTTTCTTTAATTATGAGCAAATCAATTACACCCGCAAATTCATCAAACAAAATTCTTGTTCAATTCAGTATTTCAGGTAACGTAGAAGCTAACGGTACGCACGTTGATTTTGTGTTAAGAAAAACAGTAGGAAGCACAGTCACACACCCAATTTTAGGAGACAGTGCAAGCGGATATACCTCAATTACAACTGGTTTCAGAAGTGGAGGAGGAAATCAACATAATGTCGGACAATGTATTTATCAGTTTTTAGATGATGCTGGAACAACATCTGCTATAACTTATGGTGTCGCAGTCGCTACAGAGGGGGCAACAACTTATAGGGTTAATGCAAGTGGTGGTGATTTAAGTAGCCAATCTTGGTCATCAAGACAGGCCAGTACTATAGTATTAATGGAGGTTTCAGCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
b46dd359cfc6e1fae94a226e061f355e2c0c2442bbe09b2be60f5e5fd999e0dd
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7676
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage MED4-184 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank