Protein

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Genbank accession
YP_008859422.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAKAGGTYPDIVQGVSGKPPHRRRPGQTTEQINILSDPVEGLVRRRGTRFAARLPLALSEAARVELQDMDVFDFTQEGREYALLYRRKASALGSASFAFLYDKTGEQFIPITYENSSWVNTLVAGGASSLAAIGSYVYIAGNDNRPSATSTNLWQEETNLHRLAAWIRTGKFNTTYTVTLHRADGTTLQVTYKTVTAAYPGTLDTSDIPFYLPGGTEPDPAYQKHVNDRVNEYNSAVNEWIVTSAEQTRPEYIAEKLSDLLVDEGVSSTYLKGSILIDDDQFVDITVDDEGDGTTFFAAGQEITDATYATKYHFHGKIIRVRPSGAGADEAYYLRAELESGETSGYGSVDWFETAGVTCTIDNLVAQLYIYNGQACIARNGAGITSIFPASGDHPAYGERKVGDGLTSPIPWFIDKPITMLSVFQDRLIVGSANYVNASMSGDYLDFWRGSVVTIADDDPVEMFAFGSEGDVLRHAVLYNGNLIIFGERQQYGVSGDALLTPKSPLIRAVSANKDSTDAKAQTSGNFIFYSQYGSEGVSLHQMRVGALNGQQTVTDELSEEQDNWLTGEPLQIATVTAPNVVLFRTRNQPSTFYLYRYEDNKNNGQRQLEAWSKFQYAASLGNILGVSVFKKSGIVFTGRASGVVADVLDFKGELDEHGYIDSRIAYANRTENGVADGSVVVNATSDYFLLGTPLARITEFLSQFDDLDPAALEFGVVSPASVTPTNPFPRDQNGQAVLDGRMALNRVTADVQNTAGMVAVVATRNRVQSSIDFEGRILGDSDNLVGQQPVYSGQLSIPVGREVRECSYTISSKDWLPLRVTGLSWVGQTFNNVRRVS
Physico‐chemical
properties
protein length:838 AA
molecular weight: 91584,67880 Da
isoelectric point:4,83384
aromaticity:0,10024
hydropathy:-0,26635

Domains

Domains [InterPro]
IPR058003
TTP
1–829
IPR058003
DC_0058
STR
1–838
DC_0058
YP_008859422.1
1 838
Architecture
STR
STR 1-838
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008859422.1
1 838
Domain Start End Length (AA) Confidence
N-terminal 1 192 192 0,9199
Central domain 193 397 206 0,2603
C-terminal 398 838 440 0,1473
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-192
Central
193-397
C-terminal
398-838

Taxonomy

  Name Taxonomy ID Lineage
Phage Xylella phage Prado
[NCBI] 		1415146 Uroviricota > Caudoviricetes > Autographivirales > Gujervirinae > Pradovirus
Host Xylella fastidiosa
[NCBI] 		2371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008859422.1 [NCBI]
Genbank nucleotide accession
NC_022987 [NCBI]
CDS location
range 24493 -> 27009
strand +
CDS
ATGGCAAAGGCAGGCGGAACCTACCCGGACATCGTGCAGGGCGTGAGCGGCAAGCCGCCGCACCGCCGCCGACCGGGACAGACGACCGAGCAGATCAACATTCTGTCCGATCCCGTCGAAGGGCTTGTGCGTCGTCGCGGTACGCGCTTCGCTGCCCGGCTGCCTCTGGCCCTGAGCGAGGCAGCGCGCGTCGAGCTGCAAGACATGGACGTGTTCGACTTCACGCAGGAGGGCCGCGAGTACGCGCTGCTGTATCGCCGCAAGGCGTCGGCGCTCGGCTCCGCGAGCTTCGCGTTCCTGTACGACAAGACGGGCGAGCAGTTCATCCCGATCACGTACGAGAACAGCTCGTGGGTCAACACATTGGTGGCAGGCGGGGCGTCGTCGCTCGCAGCCATCGGCAGTTACGTCTACATCGCGGGCAACGACAACCGTCCGAGTGCGACCAGCACCAACCTCTGGCAGGAGGAGACCAACCTGCACCGGCTCGCCGCGTGGATTCGCACCGGCAAGTTCAACACCACCTACACCGTGACCTTGCACCGAGCAGACGGCACCACGTTGCAGGTGACGTACAAGACGGTGACGGCTGCCTACCCCGGCACGCTCGACACGAGCGACATCCCGTTCTACCTGCCCGGCGGCACGGAGCCGGACCCGGCGTACCAGAAGCACGTCAACGACCGAGTGAACGAGTACAACTCCGCAGTCAACGAGTGGATCGTCACGAGCGCCGAGCAGACCCGGCCCGAGTACATCGCCGAGAAGTTGTCGGACTTGCTCGTTGACGAGGGCGTGTCCTCGACCTACCTGAAGGGTTCCATCCTCATCGACGATGACCAGTTCGTGGACATCACGGTGGACGATGAAGGCGACGGCACCACGTTCTTCGCGGCGGGGCAGGAAATCACCGACGCCACCTACGCGACCAAGTACCACTTCCACGGCAAGATCATTCGTGTGCGCCCGAGCGGCGCAGGCGCGGACGAGGCGTACTACCTGCGCGCTGAGCTGGAGAGCGGCGAGACCTCGGGCTACGGCTCGGTGGACTGGTTCGAGACTGCGGGCGTGACCTGCACCATCGACAACCTTGTCGCCCAGCTCTACATCTACAACGGGCAAGCGTGCATCGCTCGCAACGGTGCAGGCATCACCAGCATCTTCCCGGCGAGCGGGGACCATCCCGCATACGGCGAGCGCAAGGTCGGTGACGGCCTCACCTCTCCGATCCCGTGGTTCATCGACAAGCCCATCACGATGTTGTCTGTCTTCCAAGACCGGCTGATCGTAGGCAGTGCGAACTACGTCAATGCGAGCATGAGCGGGGACTACCTCGACTTCTGGCGCGGAAGCGTCGTGACCATCGCCGACGACGACCCGGTGGAAATGTTCGCGTTCGGTTCCGAGGGCGACGTGCTGCGGCATGCGGTGCTCTACAACGGCAACCTCATCATCTTCGGTGAGCGGCAGCAGTACGGCGTGAGCGGCGATGCGCTGCTGACTCCGAAGTCTCCGCTGATCCGGGCGGTGAGCGCAAACAAGGACAGCACCGACGCGAAGGCTCAGACCTCCGGCAACTTCATCTTCTACTCGCAGTACGGTAGCGAGGGCGTGAGCCTGCACCAGATGCGCGTGGGTGCCCTCAACGGGCAGCAGACAGTGACCGACGAGCTGAGCGAGGAGCAGGACAACTGGCTGACGGGAGAACCGTTGCAGATCGCCACGGTGACGGCACCGAACGTGGTGCTGTTCCGCACCCGCAATCAGCCCAGCACGTTCTACCTGTACCGCTACGAGGACAACAAGAACAACGGGCAGCGGCAGCTGGAGGCGTGGAGCAAGTTCCAGTACGCGGCATCGCTGGGGAACATCCTCGGCGTGAGCGTGTTCAAGAAGTCGGGAATCGTGTTCACCGGCCGCGCAAGCGGTGTGGTGGCCGACGTGCTGGACTTCAAGGGCGAGCTGGACGAGCACGGGTACATCGACTCTCGCATCGCGTACGCGAACCGCACGGAGAACGGTGTGGCCGATGGCTCCGTCGTGGTCAACGCGACGAGCGACTACTTCCTGCTGGGCACGCCACTGGCGCGCATCACGGAGTTCCTGTCGCAGTTCGATGACCTCGACCCTGCGGCGCTGGAGTTCGGCGTGGTGAGTCCCGCATCGGTGACTCCGACCAATCCGTTCCCGCGAGACCAGAACGGACAGGCTGTTCTGGACGGCCGCATGGCACTCAACCGCGTCACCGCCGACGTGCAGAACACCGCAGGCATGGTGGCCGTGGTCGCTACGCGCAACCGGGTGCAGAGCAGCATCGACTTCGAGGGCCGCATCCTCGGCGACAGCGACAACTTGGTCGGGCAGCAGCCGGTGTATTCCGGGCAGCTGTCGATCCCCGTGGGCCGCGAGGTCCGCGAGTGCAGCTACACGATCAGCTCCAAGGACTGGCTCCCGCTCCGAGTGACGGGCCTGTCGTGGGTTGGTCAGACTTTCAACAACGTGCGGAGGGTTAGCTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
4d9ad40f85039e7940def21e733f2433564eeac4b42fad057f0b318a423a196e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8940
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50