Protein

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Genbank accession
YP_010678593.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MSRNLMPKSGAMAPYIVVNRDAAVAGVFSVDGEAGAVVLTSKYLQISKYTTDKAAIDASINSINESIGNINTAIDASINSINESIGNINTALGGVNTTLGTKAAKGANNDITELNALTKAITIAQGGTGATTLEGAKKVLQVERLRQQGNGTFIVSPNEKYSLFIYDSGDFGLIESSTAAVQALKVAFGGTGGTTPKAARKNLNVPIGALAEVIPTGENVLNYVAIAGQSGYYSSGDGVTHIPPVTEGWWTYNFHCHGVDINGAAQYGVLRAVGLSGSSWINILDGTGNWKGWQEQFNLQSTISITNGGTGASTPAGAITKLGIPSFSEWTPANGVVRWVVNTPSEPTSIGTILKGGLLESSHNIAGVQRVITSLVPEYKWGESDTTTNLNVALSDAQGHIIRYGGYKFSSSGVASFGTLRALSFDGIILDRGGDPTFSNRIVLETVKGAEGATLAGSMATFVDGTSRVVVNALSVSNSRKTVLYPSGGVICKPGLQGDPQLYSYSINYSGGAAQLWIDSSNFGNIQTAPVSDKLLKKDITYRTDNEVALKQVMQWKIADFRYKKRGMLPESEMKTGWIANDLVTISPECVKGVGLTKGFDENNPKGAYELDTVAIMAKMSQAIQAQQKEIEELKELVNQLLTK
Physico‐chemical
properties
protein length:644 AA
molecular weight: 68009,91120 Da
isoelectric point:6,29665
aromaticity:0,07298
hydropathy:-0,08851

Domains

Domains [InterPro]
DC_0017
STR
1–644
DC_0017
IPR030392
CHP
532–638
IPR030392
IPR030392
CHP
532–592
IPR030392 Coil
YP_010678593.1
1 644
Architecture
STR
STR 1-644
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010678593.1
1 644
Domain Start End Length (AA) Confidence
N-terminal 1 390 390 0,6451
Central domain 391 589 200 0,1830
C-terminal 590 644 54 0,9422
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-390
Central
391-589
C-terminal
590-644

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_STy-RN29
[NCBI] 		2910950 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010678593.1 [NCBI]
Genbank nucleotide accession
NC_071038.1 [NCBI]
CDS location
range 24137 -> 26071
strand +
CDS
ATGTCACGTAACTTAATGCCTAAATCTGGCGCAATGGCGCCATATATTGTAGTTAACAGAGATGCTGCGGTTGCTGGTGTTTTCTCTGTTGATGGAGAAGCTGGTGCTGTTGTACTAACTTCTAAGTATTTACAAATCTCTAAGTATACTACTGATAAGGCTGCTATCGATGCATCTATTAATAGTATTAATGAATCAATCGGTAATATTAATACTGCTATCGATGCATCTATTAATAGTATTAATGAATCAATCGGTAATATTAATACTGCTCTTGGTGGGGTTAATACTACTCTAGGCACTAAAGCAGCGAAAGGTGCTAATAACGATATTACAGAATTAAATGCACTAACTAAAGCTATTACAATTGCTCAAGGAGGTACTGGTGCTACTACATTAGAGGGTGCTAAAAAGGTATTACAGGTTGAACGTCTTCGTCAGCAAGGTAATGGAACTTTTATTGTATCTCCTAATGAGAAATATTCTTTATTTATATATGATAGTGGGGATTTTGGTTTAATTGAGAGTTCTACTGCAGCTGTACAAGCATTAAAAGTTGCATTTGGGGGTACTGGAGGAACTACTCCAAAAGCTGCAAGAAAAAATCTTAACGTTCCGATTGGTGCCCTAGCTGAGGTAATACCTACTGGAGAGAATGTCCTAAATTATGTAGCAATAGCTGGACAAAGTGGATACTACTCCTCCGGAGATGGTGTTACACATATTCCTCCAGTTACCGAAGGATGGTGGACATATAATTTTCATTGTCATGGGGTGGACATTAATGGTGCTGCACAGTATGGTGTTTTAAGGGCTGTTGGGTTATCCGGTAGCTCATGGATCAATATTCTAGATGGTACTGGTAACTGGAAAGGTTGGCAGGAACAGTTTAATCTACAGTCAACAATCTCTATAACTAATGGTGGTACTGGAGCATCTACACCTGCAGGTGCTATAACTAAACTGGGAATTCCTAGTTTCTCAGAATGGACTCCAGCTAATGGAGTAGTGCGTTGGGTAGTTAATACTCCTTCTGAACCTACTAGTATAGGTACAATATTAAAAGGTGGATTATTAGAAAGCTCCCATAATATTGCAGGAGTACAGCGAGTTATTACTAGTTTAGTTCCTGAATATAAGTGGGGAGAATCTGATACAACTACTAATCTTAACGTAGCTTTATCTGATGCACAAGGTCACATTATTCGCTATGGTGGATATAAATTCTCCTCTAGTGGAGTAGCTTCTTTTGGTACTCTAAGAGCTTTATCTTTTGATGGTATTATACTAGATAGGGGAGGAGATCCTACTTTCTCAAATAGAATAGTTCTTGAGACAGTAAAAGGGGCTGAAGGGGCTACGTTAGCGGGAAGTATGGCTACCTTTGTAGATGGAACATCACGAGTTGTAGTTAATGCTTTAAGCGTCTCTAATAGTAGAAAAACTGTTTTATACCCTAGTGGTGGTGTTATATGTAAACCAGGACTTCAAGGAGATCCCCAACTTTATAGTTATAGTATTAACTATTCTGGAGGGGCTGCACAGTTGTGGATTGATAGCTCTAACTTTGGTAACATACAAACAGCACCAGTATCCGATAAGTTATTAAAGAAGGATATAACTTATCGTACGGATAATGAGGTTGCCCTTAAACAGGTGATGCAGTGGAAGATAGCTGATTTTAGGTACAAGAAGAGAGGTATGCTACCCGAGTCGGAGATGAAAACTGGTTGGATTGCGAACGATCTTGTAACTATAAGTCCAGAATGTGTCAAGGGCGTAGGGTTAACCAAAGGTTTTGATGAAAATAACCCTAAAGGAGCCTATGAACTAGATACGGTTGCAATAATGGCTAAAATGTCTCAGGCTATTCAAGCACAGCAAAAAGAGATAGAAGAGTTGAAAGAACTTGTCAATCAACTACTCACTAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
241c5085d25b81b195a64bd210573c24741546343376fa5013c96b315b12ab94
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7129
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and complete genome sequence of Salmonella phage vB_STy-RN29 Imklin,N. and Nasanit,R. 2022-01-10 — GenBank