Protein

View in Explore
Genbank accession
QIG74373.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MVDFTNTAEFILPAFNLIGTGPLYSGYGDPGNPVDGSTFGVKVKQAKTFAITDPIIKRVAIGIDVTQTPSWQDGGSIRGGHISHCFRGIYLHDTGEGIFVSGTNVSDCVFGITVDSGNSNLANGQTTFCSVGLLIGPSTGAGVNGAHASVMGWNSRHNKYNLSCQNVTLGHYIGGSNFIGGQGGADQGGIQIYNSKGIVIEGGQTAYSNITVDSTSQLFMRDVLFRGPVNIAVSPGGAFDAKGCMVMAGSALQISYDGGSTYSAFSGNTP
Physico‐chemical
properties
protein length:270 AA
molecular weight: 27871,78240 Da
isoelectric point:5,78322
aromaticity:0,09259
hydropathy:0,02926

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QIG74373.1
1 270
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0086
Central domain 11 227 218 0,9943
C-terminal 228 270 42 0,9661
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-227
C-terminal
228-270

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_N65
[NCBI] 		2509753 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIG74373.1 [NCBI]
Genbank nucleotide accession
MN988536.1 [NCBI]
CDS location
range 40478 -> 41290
strand +
CDS
GTGGTCGACTTTACCAACACGGCTGAATTCATCCTGCCCGCGTTCAATCTCATCGGAACCGGTCCACTCTATTCCGGGTACGGTGACCCCGGAAACCCGGTCGATGGCTCCACCTTCGGCGTCAAGGTCAAGCAGGCGAAGACATTCGCCATAACCGACCCGATCATCAAGCGGGTGGCGATCGGCATCGATGTCACGCAAACTCCCTCATGGCAGGACGGCGGCTCAATCCGCGGCGGCCACATATCGCACTGCTTCCGGGGCATATACCTGCATGATACCGGGGAAGGCATCTTTGTCAGCGGAACCAACGTTTCCGATTGCGTCTTCGGCATCACGGTGGACTCCGGCAACAGCAATCTGGCGAACGGTCAAACAACCTTCTGCTCTGTCGGGTTGCTCATCGGTCCCTCTACAGGCGCAGGCGTGAACGGCGCCCATGCTTCGGTGATGGGCTGGAATTCGCGCCACAACAAATACAATCTGTCGTGCCAGAACGTCACGCTTGGTCACTACATCGGTGGCAGCAACTTCATCGGCGGTCAGGGTGGGGCGGATCAGGGCGGAATTCAGATCTACAATTCCAAGGGGATTGTGATCGAGGGCGGCCAGACGGCTTATTCGAACATCACGGTCGACAGCACGAGCCAACTTTTCATGCGAGATGTCCTCTTCCGCGGACCTGTGAATATCGCGGTTTCTCCTGGGGGTGCCTTTGACGCCAAGGGCTGCATGGTTATGGCAGGATCTGCGCTGCAGATATCCTATGACGGCGGCTCTACCTATTCGGCCTTCAGCGGCAACACGCCTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
c42a97719de93b1e706ddb5ed3107d732c55aa84f226c853d341482d313e0657
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8511
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank