Protein

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Genbank accession
ALO79998.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MGLVSQSTKNLKGGISQQPNILRFSNQGEMQVNGWSSETQGLQKRPPTTFLKRLADPGFLGSKPLVHLINRDAQEQYYVAFSGGGMAIWDLKGNWYTVRNYNGYANCANPRTDLRIITIADYTFVVNRQRTVQMAGGLTWAGYPRLDGRALINVRGGQYGRTLSITINGDGTGNSPQASIKMPNGSAEKVPAGEPYAGMNQVDMTDASWIANELATQLQRNLGPSGWSFSAGTGWILINAPGNDNVRQIATRDGYADTLLNGFIYQVQTFNKLPANAPNGYIVEITGESARSGDNYWVQYDASAKVWKETAKPKIIAGIEPSTMPHALIRAADGQFDWAPLQWDQRNAGDDDTNPMPSFVGATINDVFFFRNRLGFLSGENVVMSRTSRYFNFFPSSVATLSDDDPIDVAISHNRISILKYAVPFSEQLLLWSDQAQFVLSSNGILSSKTIELDLTTEFDVSDGARPYGIGRGVYFAAPRASFTSLKRYYAIQDVSDVKSAEDVSAHVPSYLPNTVHAIHGSGTENFVSILSDGEPGNVYIYKFLYLNEQLQQQSFSHWNFGGNTTILAAASIGSYLYLMAQRPEGITLERMEFTQHTIDFAIEPYRAYMDMKKQVTLGAYDIDTNRTTLDLTNVYGGVPGADAVFYTLDQRGVITEFSGPWNGNSKLSFTGNRQGENLIIGKKYTFQYEFSKFLIKQTADDGSTSTEDIGRLQLRRAWLNYEQSGSFEINVNNGSTEYVYVMSGGRLGQQIVLGELSLGTGQYKFPVTGNALNQRVTITSDTPNPLNVIGCGWEGNYIRRSSGI
Physico‐chemical
properties
protein length:805 AA
molecular weight: 88847,25320 Da
isoelectric point:5,68182
aromaticity:0,11180
hydropathy:-0,34012

Domains

Domains [InterPro]
IPR058003
TTP
1–805
IPR058003
ALO79998.1
1 805
Architecture
TTP
TTP 1-805
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ALO79998.1
1 805
Domain Start End Length (AA) Confidence
N-terminal 1 145 145 0,9918
Central domain 146 344 200 0,2747
C-terminal 345 805 460 0,1299
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-145
Central
146-344
C-terminal
345-805

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage PPPL-1
[NCBI] 		1755692 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Hennigervirus
Host Pseudomonas syringae pv. actinidiae
[NCBI] 		103796 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ALO79998.1 [NCBI]
Genbank nucleotide accession
KU064779 [NCBI]
CDS location
range 25391 -> 27808
strand +
CDS
ATGGGTCTCGTTTCGCAATCCACGAAGAACCTCAAGGGAGGTATCTCGCAGCAACCCAACATCCTGCGCTTCTCGAACCAAGGGGAGATGCAGGTCAACGGATGGTCTTCGGAGACTCAAGGTCTTCAGAAGCGTCCACCTACCACGTTCCTCAAGCGACTCGCAGATCCGGGTTTTCTGGGCAGCAAGCCTCTGGTCCATCTGATCAATAGGGACGCTCAGGAGCAATACTACGTGGCCTTCTCTGGTGGTGGCATGGCCATATGGGACCTCAAGGGCAACTGGTACACGGTGCGGAACTACAACGGTTACGCCAACTGTGCAAACCCAAGGACCGACCTGAGGATCATCACCATCGCTGACTACACCTTCGTGGTGAACCGCCAGCGCACAGTGCAGATGGCCGGGGGACTGACATGGGCAGGCTATCCAAGGCTCGACGGTCGCGCTCTGATCAACGTCCGAGGCGGACAATACGGTCGGACCCTCTCGATCACAATCAACGGTGACGGTACAGGGAACTCCCCTCAGGCGTCCATTAAGATGCCCAACGGTTCCGCCGAAAAGGTTCCCGCTGGTGAGCCATATGCGGGCATGAATCAGGTAGACATGACGGACGCCTCATGGATCGCCAATGAGCTGGCAACCCAACTCCAACGCAACCTCGGTCCTTCGGGATGGAGCTTCTCGGCGGGGACCGGCTGGATCTTGATCAACGCTCCGGGTAATGACAACGTGCGCCAGATTGCAACACGCGATGGCTACGCTGACACACTACTCAATGGATTCATCTATCAGGTCCAGACGTTCAACAAGCTGCCAGCCAACGCACCCAATGGGTACATCGTTGAGATCACCGGTGAGAGTGCCCGCTCAGGCGACAACTACTGGGTCCAATATGACGCCTCCGCTAAGGTCTGGAAGGAGACGGCCAAGCCAAAGATCATTGCTGGTATCGAACCCTCAACGATGCCTCACGCGCTAATACGAGCCGCTGATGGTCAGTTCGATTGGGCACCCTTGCAGTGGGACCAACGCAACGCTGGGGATGACGACACGAACCCTATGCCGTCCTTCGTAGGCGCGACGATCAATGACGTGTTCTTCTTCAGGAACCGTTTAGGTTTCCTATCGGGTGAGAACGTGGTCATGTCGAGGACTTCTCGATACTTCAACTTCTTCCCAAGCTCCGTTGCGACCTTGAGCGATGACGATCCGATTGACGTGGCTATCAGTCACAACCGCATCTCGATCCTCAAGTACGCCGTGCCCTTCAGTGAGCAGTTGCTACTGTGGTCTGACCAAGCTCAGTTCGTTCTGTCGAGCAACGGTATCCTGTCGAGCAAGACCATCGAGCTGGACCTGACTACCGAGTTTGACGTGAGTGATGGAGCCCGTCCCTATGGGATTGGTCGAGGCGTTTACTTCGCAGCACCACGGGCTTCCTTCACGTCCCTCAAACGGTACTACGCGATTCAGGATGTCTCTGACGTGAAGTCCGCTGAGGATGTCTCTGCGCACGTTCCGAGCTACTTGCCGAACACCGTCCATGCAATCCATGGGTCGGGCACTGAGAACTTCGTGAGCATCCTCTCGGATGGCGAGCCGGGCAACGTCTACATCTACAAGTTCCTGTACCTGAACGAGCAACTGCAACAACAGTCGTTCTCTCACTGGAACTTTGGGGGCAACACCACGATCCTCGCAGCGGCCTCGATTGGCTCCTACCTGTACCTGATGGCTCAACGTCCTGAAGGGATCACTCTGGAGAGAATGGAGTTCACACAGCACACCATCGACTTCGCCATTGAGCCTTATCGGGCCTACATGGACATGAAGAAACAGGTAACTCTGGGCGCTTACGACATCGACACGAACAGGACCACGCTGGACCTCACAAACGTCTATGGAGGCGTTCCGGGTGCAGACGCTGTGTTCTATACCCTCGACCAGAGAGGCGTCATTACCGAGTTCTCTGGGCCTTGGAATGGGAACTCCAAGTTGTCCTTTACGGGCAACCGCCAAGGCGAGAACCTGATCATCGGGAAGAAGTACACCTTCCAGTACGAGTTCTCGAAGTTCCTGATCAAGCAGACCGCTGACGATGGATCGACCAGCACCGAGGACATCGGTCGGTTGCAGCTTCGCCGTGCGTGGCTCAACTACGAGCAGTCCGGGTCTTTCGAGATCAACGTCAACAACGGCTCCACTGAGTACGTCTACGTGATGTCTGGTGGTCGTCTTGGGCAACAGATCGTGCTGGGCGAACTCTCGCTGGGCACCGGCCAGTACAAGTTCCCGGTAACGGGCAACGCTCTCAACCAACGGGTCACCATCACCAGCGATACACCGAACCCACTCAACGTGATCGGCTGTGGCTGGGAAGGTAACTACATCCGCCGTTCTTCCGGCATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2e0a89ed810a57ebad40c3f6eaee45b28ecafec73318bef8e94aae05e275ed2c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9017
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophage PPPL-1 effective to Pseudomonas syringae pathovars Yu,J.-G., Lim,J.-A., Heu,S. and Oh,C.-S. 2018-09-28 — GenBank