Protein

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Genbank accession
YP_007010690.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MVQRLGSSLISHKGRILSNLVDMSPTISVGDAKRLTPNEGDKILLNGLQYSFNPNLGLVDNPNSPNITTDDEIHILVNSGGHWVFDDYDKLAKMESRNYAKYLGKLRTRQNIKFATFGDSITWGYGIGGVRFDKPWPTHMVEELTSTNRQTFTVDNFAIPSDRAVTQYERTMSQASDADICTIMLGVNDAKFASDNGNDITAINGNSLYGIENYALIMRKFIAREILRGRCVVVLGTTPYVSGATTDEMGNMAEPWVARSYDSTAKSVAEEFGCAFIDTKRDIMLHFGISESMHDGIHPKEDFVPVLGKRFAAVFANQDYKNPYVLTPGSVMLPNWLMFPISSNRPLKLSELKNGSSPPFGGAADDPDAIGIKLPQDALGGKVTFAFYLDTDSLVLFPSINSAGGQYSFGLIADGGAKQPAYTSTFLSLLPDRQYISSGRSVIGSGKKNRRTESYSQIYTACYMHYTTRGWHTLSFNIGDNAGDVNIEGIVCTTYQEVKDNDIYGGVSGSVQMKTNAAPEFSGVIASVNNSDTGTYVFTLGSILSQDRYRVDIQGYDDNGVALQGRYDWKADRSFRVRFFNESGALQSPVNYIVQTIGGR
Physico‐chemical
properties
protein length:600 AA
molecular weight: 65952,29330 Da
isoelectric point:5,68767
aromaticity:0,10333
hydropathy:-0,28517

Domains

Domains [InterPro]
SSF52266
STR
105–315
SSF52266 DC_0735
SSF52266
STR
110–315
SSF52266
IPR036514
STR
113–318
IPR036514
cd00229
ENZ
115–299
cd00229
IPR013830
ENZ
117–301
IPR013830
YP_007010690.1
1 600
Architecture
STR
RBD
STR 105-318 | RBD 319-567 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007010690.1
1 600
Domain Start End Length (AA) Confidence
N-terminal 1 209 209 0,5509
Central domain 210 430 222 0,6566
C-terminal 431 600 169 0,9855
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-209
Central
210-430
C-terminal
431-600

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage PP1
[NCBI] 		1217810 Uroviricota > Caudoviricetes > Autographivirales > Molineuxvirinae > Axomammavirus
Host Pectobacterium carotovorum subsp. carotovorum
[NCBI] 		555 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Pectobacterium

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007010690.1 [NCBI]
Genbank nucleotide accession
NC_019542.1 [NCBI]
CDS location
range 42133 -> 43935
strand +
CDS
ATGGTTCAACGTCTAGGCTCTAGCCTAATTTCACACAAAGGACGTATTCTGTCCAACCTAGTTGACATGTCTCCCACTATTAGTGTGGGTGATGCTAAGCGTCTTACACCGAATGAGGGTGACAAGATTCTGCTTAACGGTTTGCAGTATTCGTTTAACCCTAACCTCGGTCTAGTTGATAACCCTAACTCACCAAACATTACTACGGATGACGAGATTCACATTCTGGTAAACTCTGGTGGACATTGGGTGTTTGATGACTATGACAAGCTGGCGAAGATGGAGTCGCGCAACTATGCTAAGTACCTTGGCAAACTGCGTACCCGTCAGAACATTAAGTTTGCCACCTTTGGTGATAGTATTACATGGGGTTATGGTATCGGCGGTGTCCGATTTGATAAACCCTGGCCGACCCATATGGTAGAAGAGTTGACTAGTACTAACCGTCAAACCTTCACAGTTGACAACTTTGCCATCCCGTCTGACCGTGCTGTGACTCAATATGAGCGCACCATGTCACAGGCATCTGATGCTGACATCTGCACCATCATGCTTGGCGTGAATGATGCTAAGTTCGCATCGGACAATGGTAACGACATCACTGCCATCAATGGTAATTCACTCTACGGCATCGAAAACTATGCGCTGATTATGCGTAAGTTCATTGCACGTGAGATTCTACGTGGACGATGCGTAGTTGTGCTTGGAACCACACCGTATGTTAGCGGTGCCACCACAGATGAGATGGGTAACATGGCAGAGCCGTGGGTTGCTCGTTCGTATGACTCTACAGCTAAGTCTGTAGCAGAAGAGTTCGGTTGTGCATTCATCGATACCAAGCGTGACATTATGTTGCACTTCGGTATTAGTGAGTCGATGCACGATGGCATACACCCAAAGGAGGACTTTGTTCCTGTACTTGGTAAGCGTTTCGCTGCTGTGTTTGCTAATCAGGACTACAAGAACCCATACGTGCTGACACCCGGCTCGGTAATGTTACCGAACTGGTTGATGTTCCCTATCTCATCTAACAGACCACTCAAGTTGAGTGAGTTGAAGAACGGTAGTTCGCCTCCGTTCGGTGGTGCCGCTGATGACCCTGATGCTATTGGCATCAAGCTACCACAAGATGCGTTAGGTGGTAAGGTGACATTCGCCTTCTATCTAGATACAGACAGTCTGGTTCTGTTCCCTAGCATTAACTCGGCTGGTGGTCAGTACAGCTTCGGTCTGATTGCAGATGGCGGAGCCAAGCAACCTGCGTATACTTCTACGTTCCTGTCTCTTCTGCCAGATCGCCAGTACATTTCCTCTGGTCGCTCCGTCATTGGCTCAGGGAAGAAGAACCGGAGAACTGAAAGCTACTCTCAGATCTACACTGCGTGCTACATGCACTACACAACTCGCGGATGGCACACCTTGTCATTCAACATTGGAGACAATGCGGGTGATGTGAACATCGAAGGTATCGTTTGTACCACATATCAGGAGGTGAAAGACAATGACATCTACGGTGGAGTAAGTGGTTCTGTTCAGATGAAGACCAACGCTGCACCTGAATTCTCCGGTGTGATTGCTTCTGTGAACAACAGCGATACTGGCACCTACGTGTTCACTCTGGGCAGTATCTTGTCTCAGGATCGTTATCGTGTAGATATCCAAGGTTATGATGATAATGGTGTGGCTCTACAAGGTCGCTATGATTGGAAGGCAGACAGATCGTTCCGTGTCCGCTTCTTCAATGAGAGTGGTGCTCTACAGTCACCAGTGAACTATATTGTGCAGACCATTGGTGGTCGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a6c680357283adb8b0a6a32206e705a1b4e7139663361d24c876d7c17d1e7ff5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6968
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50