Protein

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Genbank accession
UMW87809.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MARPFEGALNDLLQGVSQQVPRERVAGQCSAQVNMLSDPVTGIRRRPGSLFVSVHDFGPIGEGDALYTQYLERGADGRHLVINTNTGGWWLLDREAKNIVSEGNLSYLLAADRRSIQTTSMGGVTYILNTEKRPSATTDNSDKKDPKTTGFYFVKSGAFSKEYDISVVWSLGSQTVTYTTPDGTTAGDADQSVPEAIARKLVEKLIAVGVDFAVRVGPYIYFELITGTDLKITSTSGSPYVGYSNQSQVNLETDLPARMHPSADGALCAVGQSERALVWYRYSADKGVWLESGDYNSVTAISVDVPYKIVDDNMEQHIMEGRLAGDDLTNPAPTFLEERRITGIGTFQGRLVLLSGAYVCMSATGEPDRFFRSTVSSLDPTDRIDIASGSAQNSVFRQALQFNKDLILLGDSTQAVVPSLQQLLAPDNASVVLTSDLACNAFVAPVTTSQTLMYPAPRSEAFSAVLELVPSQYTSSQYVSQDVTTHIPRYIEGEARFMQSASAANIVLMATTGDNRQVIAHEYHFTSQGKVHQAWHKWLFPYRVASLHFARDRVVLFAADDTGSTDKITITTIDPKQGGVTFDVDRLPHLDAMSRVPITTEGKGIVPIYMRPWVAEGKLTGAVATGARASEEVAIDVDEITWEFTVESGSTHEEIFLGFRYESMFAPTPPMLKDQNDTLISTAPVRLLRYELTTRNTGEFDVRIVDPSIGLDYSDSTTSLVFGTDSVQPDMALLADLARVPVPCRSNAQSTEMYLSTDGTQDMNILEIEYIIRYNQRRRRV
Physico‐chemical
properties
protein length:781 AA
molecular weight: 85767,30870 Da
isoelectric point:4,93848
aromaticity:0,08451
hydropathy:-0,20845

Domains

Domains [InterPro]
DC_0058
STR
1–781
DC_0058
IPR058003
TTP
9–781
IPR058003
UMW87809.1
1 781
Architecture
STR
STR 1-781
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UMW87809.1
1 781
Domain Start End Length (AA) Confidence
N-terminal 1 140 140 0,9888
Central domain 141 339 200 0,0615
C-terminal 340 781 441 0,2436
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-140
Central
141-339
C-terminal
340-781

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage OY1
[NCBI] 		2923285 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio sp.
[NCBI] 		678 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UMW87809.1 [NCBI]
Genbank nucleotide accession
OM799543 [NCBI]
CDS location
range 24009 -> 26354
strand +
CDS
ATGGCTCGACCATTTGAGGGTGCATTGAATGACCTGCTGCAAGGTGTGTCCCAACAAGTTCCACGTGAGCGTGTGGCTGGACAATGCTCTGCGCAGGTTAATATGCTGTCCGACCCAGTAACAGGCATCCGTCGTCGTCCCGGTAGCCTGTTCGTGAGTGTGCACGATTTCGGCCCGATTGGTGAGGGTGACGCGCTGTACACGCAGTATCTCGAACGAGGTGCTGATGGACGACACTTAGTAATCAACACCAACACAGGCGGCTGGTGGCTCTTAGACCGTGAGGCCAAGAACATCGTGAGTGAGGGCAACTTGTCTTACCTCCTAGCGGCTGACCGTCGCAGTATCCAGACTACCAGTATGGGCGGTGTCACGTACATTCTTAACACTGAGAAGCGCCCGTCTGCAACGACTGACAACTCTGACAAGAAAGACCCGAAGACAACAGGCTTCTACTTCGTCAAGAGTGGTGCGTTCAGTAAAGAATACGATATTTCCGTAGTATGGTCGCTCGGTAGCCAAACCGTGACATACACCACGCCAGATGGTACAACAGCAGGTGACGCAGACCAGTCTGTGCCAGAAGCAATTGCGCGTAAACTGGTTGAGAAGTTAATTGCTGTGGGTGTGGACTTCGCTGTGCGTGTTGGCCCGTACATTTACTTTGAACTAATCACAGGTACTGACCTTAAAATCACAAGTACATCTGGTTCGCCTTACGTTGGTTACTCAAACCAATCACAGGTAAACCTAGAGACTGACCTCCCTGCGCGTATGCACCCATCTGCTGATGGTGCACTGTGTGCTGTAGGTCAATCAGAGCGTGCACTTGTGTGGTATCGTTACAGTGCCGACAAAGGTGTGTGGTTGGAATCTGGTGACTACAACTCTGTGACCGCTATCAGCGTGGATGTGCCCTATAAGATTGTCGATGACAACATGGAGCAACATATCATGGAGGGGCGTCTCGCAGGTGACGACTTAACTAACCCTGCACCGACATTCCTTGAAGAACGCCGCATCACTGGTATCGGTACGTTCCAAGGTCGTCTAGTGCTTCTATCTGGTGCGTACGTCTGTATGAGTGCCACTGGCGAACCAGACCGTTTCTTCCGCTCTACCGTGAGTTCCCTTGACCCAACAGACCGCATTGATATTGCATCCGGTTCAGCTCAGAACTCAGTGTTCCGCCAAGCGTTACAGTTCAACAAGGACTTGATTCTACTTGGTGACAGCACACAGGCGGTAGTACCGTCCCTGCAACAGTTACTTGCACCTGATAACGCAAGCGTGGTGTTGACCTCAGATTTGGCCTGTAATGCGTTTGTAGCACCTGTTACAACCTCACAGACCCTGATGTACCCTGCACCTCGAAGCGAAGCATTCAGTGCAGTTCTGGAGCTTGTACCGTCACAGTACACCTCGTCTCAGTACGTATCTCAAGACGTTACGACTCACATCCCACGTTACATTGAGGGTGAGGCTCGTTTCATGCAGAGTGCGAGTGCTGCGAACATCGTACTAATGGCGACTACTGGCGACAACCGTCAGGTGATTGCTCACGAGTACCACTTCACAAGTCAAGGTAAAGTGCACCAAGCATGGCACAAATGGCTCTTTCCATACCGTGTCGCTAGTTTGCACTTTGCTCGTGACCGTGTTGTGTTGTTTGCCGCAGATGACACTGGTAGTACCGACAAAATCACTATCACAACTATCGACCCTAAACAGGGTGGTGTGACGTTTGATGTTGACCGATTACCGCACCTAGATGCAATGAGCCGCGTGCCTATTACAACTGAGGGTAAGGGTATCGTGCCAATCTATATGCGTCCTTGGGTAGCGGAGGGCAAGCTCACTGGTGCTGTGGCGACTGGTGCACGTGCCTCTGAGGAAGTGGCTATTGACGTAGACGAAATCACTTGGGAGTTCACTGTTGAATCAGGCTCAACACATGAGGAAATCTTTCTAGGTTTCCGGTACGAGTCTATGTTCGCACCGACACCTCCAATGCTGAAAGACCAGAACGATACTCTAATCAGTACTGCTCCGGTTCGTCTGTTGCGTTATGAGTTAACAACTCGAAATACTGGTGAGTTCGATGTACGCATCGTTGACCCAAGTATCGGATTGGATTACTCAGATAGCACAACTAGCCTTGTGTTTGGTACTGATAGCGTTCAGCCAGATATGGCGTTACTTGCTGACCTAGCACGCGTCCCTGTGCCGTGTCGAAGCAATGCGCAGTCTACTGAAATGTACTTGAGTACTGACGGTACACAGGATATGAACATTCTGGAAATTGAATATATCATTCGTTACAACCAACGCCGACGTCGCGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
905e6c41120c0ae3bf9a2e504f4a5452fd3b04f96c8b0a0b9f6ae9a81bb2aebc
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2900
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of a lytic vibriophage OY1 and its biocontrol effects against Vibrio spp. Gao,L., Ou-Yang,M., Li,Y., Yang,Z.-Q. and Gao,S. 2022 35464931 GenBank