Protein

View in Explore
Genbank accession
XOL10427.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,84
Protein sequence
MRKIVVVLGLALASLSFASMAKDNDNNSRGDVTVVGDGTGSVHISQCASTWNCNNSKLNVEFTGDVENVTINGEHTVIKGQDGKDGKDGIDGKDGANGKDGINGIDGAKGDKGDKGDTGASGKDGKDGLNGTNGTNGRDGVDGKDGAKGDTGAQGERGEQGIQGETGAAGKDGLNGSDGKDGLNGKDGAKGDKGDEGKQGIAGIAGLNGKDADMTQVNANTEANKSISKRQDTFEKSTNQRFANMDKRIDENRKNASAGIAGVAAMANIPQVSQNSSFSVGTGVGSYDSEQGLAVGMSARFNENVVTKASVAATTQDDFVFGAGVSYI
Physico‐chemical
properties
protein length:328 AA
molecular weight: 33164,49060 Da
isoelectric point:4,85691
aromaticity:0,03354
hydropathy:-0,69573

Domains

Domains [InterPro]
DC_0989
ATT
1–85
DC_0989 DC_2298 IPR005594
IPR050149
Unmapped
79–210
IPR050149 G3DSA:3.30.1300.30
IPR008160
STR
80–137
IPR008160 IPR008160 G3DSA:3.30.1300.30
IPR045584
RBD
238–327
IPR045584
XOL10427.1
1 328
Architecture
ATT
STR
RBD
ATT
ATT 1-85 | STR 86-255 | RBD 256-269 | ATT 270-328
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage As2
[NCBI] 		3388310 Viruses >
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XOL10427.1 [NCBI]
Genbank nucleotide accession
PQ785583.1 [NCBI]
CDS location
range 10534 -> 11520
strand +
CDS
ATGCGTAAAATTGTAGTAGTACTCGGCCTTGCACTGGCCTCTCTGTCTTTTGCTTCTATGGCAAAGGATAATGATAACAACTCTCGTGGAGATGTTACTGTTGTTGGTGATGGAACTGGTTCAGTTCATATCAGTCAATGTGCCTCTACTTGGAATTGTAATAATTCCAAGTTAAATGTGGAGTTCACTGGTGATGTTGAAAACGTCACTATTAATGGTGAACATACTGTCATTAAAGGACAAGATGGCAAAGACGGAAAGGACGGTATCGATGGAAAAGATGGTGCTAACGGTAAGGATGGCATCAATGGTATCGACGGAGCCAAAGGTGACAAAGGCGATAAAGGAGATACTGGAGCATCTGGCAAGGATGGTAAGGACGGATTAAATGGAACCAACGGTACTAATGGTCGTGATGGTGTTGACGGCAAAGATGGAGCCAAAGGTGATACTGGTGCTCAAGGTGAACGTGGTGAGCAGGGTATTCAAGGCGAAACAGGTGCTGCTGGTAAAGATGGTTTAAATGGTTCTGATGGTAAGGATGGTCTTAACGGGAAAGACGGTGCTAAAGGAGATAAAGGTGATGAAGGCAAACAAGGTATTGCTGGAATCGCTGGGCTGAATGGTAAAGATGCAGATATGACTCAGGTCAATGCTAATACCGAAGCCAATAAATCTATCTCTAAGCGTCAGGATACTTTTGAGAAATCCACCAATCAACGTTTTGCCAATATGGATAAACGTATTGATGAGAATCGTAAAAATGCATCTGCTGGTATTGCGGGTGTAGCTGCTATGGCTAACATTCCACAAGTAAGCCAGAATAGTTCATTCTCAGTTGGTACTGGAGTTGGCTCATATGATAGTGAACAAGGTCTTGCTGTTGGTATGAGTGCTCGTTTTAACGAGAATGTAGTAACCAAAGCTTCAGTAGCTGCTACTACCCAAGATGATTTCGTCTTTGGTGCAGGTGTAAGCTACATATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
c61df354731c762fa58eecdbb72407e29aa3daf5c3f661787e89be38f4a00e17
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6313
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Surface-mediated Bacteriophage Defense Incurs Fitness Tradeoffs for Interbacterial Antagonism Tsai,C.E., Wang,F.Q., Yang,C.W., Yang,L.L., Nguyen,T.V., Chen,Y.C., Chen,P.Y., Hwang,I.S. and Ting,S.Y. — — GenBank