Protein

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Genbank accession
YP_010672638.1 [GenBank]
Protein name
virion structural protein
RBP type
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence Phold
Probability 1,00
Protein sequence
MKVHNTVAKSLLQGGSVGSDTNVGQYGATEQNLKPVGSGGGGCDCEEELELLAENLNQKIESEMREFKEEVDQELDSITASATGIPHGNAPRVEYSPTQTEFLFVIPDGADGYTPVKGVDYFDGQDGAKGDKGDDGYTPVKGVDYFDGETGPIGPEGKSDNGLVNYNTLPGIPVIIDIEDGFIYNFDLVDPNTNIVINNPPPLNDRGIQITLMMTQTTGSNLITITTQGGGTVKWPNGLVPRLSYEPGSTDVITLLSIDGGVNYFGFLSGSDFK
Physico‐chemical
properties
protein length:274 AA
molecular weight: 29136,80660 Da
isoelectric point:4,12102
aromaticity:0,07664
hydropathy:-0,37372

Domains

Domains [InterPro]
Coil
46–77
Coil
YP_010672638.1
1 274
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage Vp_R1
[NCBI] 		2059867 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010672638.1 [NCBI]
Genbank nucleotide accession
NC_070978 [NCBI]
CDS location
range 74650 -> 75474
strand +
CDS
ATGAAAGTTCATAATACTGTAGCTAAGTCCCTCCTTCAAGGAGGAAGTGTAGGCTCAGATACAAATGTTGGGCAGTACGGCGCTACTGAGCAAAACCTGAAGCCTGTGGGCAGTGGTGGGGGTGGCTGTGACTGTGAAGAGGAATTAGAACTTCTTGCTGAAAACCTTAATCAGAAAATAGAATCTGAGATGAGGGAGTTTAAGGAAGAGGTTGATCAAGAGCTTGACAGTATAACAGCATCTGCCACTGGAATACCTCATGGTAATGCTCCTCGGGTCGAGTACAGCCCAACACAAACGGAGTTCCTGTTTGTAATACCTGATGGTGCAGATGGCTACACTCCCGTTAAAGGTGTTGACTACTTTGATGGTCAAGACGGTGCTAAGGGTGATAAAGGGGATGATGGTTACACACCTGTAAAGGGTGTTGATTACTTCGATGGAGAGACTGGTCCCATTGGTCCAGAGGGTAAATCAGATAATGGGTTGGTGAATTATAATACACTGCCAGGAATACCAGTCATTATAGATATTGAAGATGGATTCATCTATAACTTCGACCTCGTAGACCCTAACACTAACATTGTTATAAACAACCCACCTCCTCTAAATGACAGAGGAATACAGATAACTTTAATGATGACTCAGACAACTGGCTCCAACCTAATAACAATAACAACTCAAGGTGGAGGTACTGTAAAATGGCCTAATGGATTAGTACCTAGGCTGTCTTATGAACCAGGCTCTACTGATGTCATAACACTTCTGTCTATAGATGGAGGAGTAAACTACTTTGGTTTCCTTAGTGGTTCAGATTTCAAATAA

Tertiary structure

PDB ID
4ab393102b2f926c39289f539a701034d2fa18f69525626f017ee8e19fdcf7c3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7510
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic analysis of a novel phage Vp_R1 lytic to Vibrio parahaemolyticus Ren,H. and Li,Z. 2023-06 — GenBank