Protein

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Genbank accession
YP_010054109.1 [GenBank]
Protein name
head-binding domain-containing protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MATTPTNKPIPSEDPRDLKFNAGKIDEVVNSDAHYYTDRFGVRRWTIAGFQHTAEEAIRNYGYITMDSFEDGATLTLPNQTLRYEANGEYYRWDGEFPKIVTAGSTPETAGGIGVGSWVSVGDAALRTQLANTTGADLVGIMPYGTVQDAIKWVVPEVFPGGNASEKLQAAVNYAVANKTRLVASGVYDVTTPVTISGDIIIDASAGEFTFNGIDYIFHPLGAKSVEIIGGKFTANAYHTQRPQVIFNDYPDGLANLPTRVVLKDMQCFNCGVGYIMVNCQDPTSVHISVDNNYCKTDDNTDQYISDAGMSGAQGEVYPYLMILGNTTASVDIGTPRKSMFHVTNNTFDVFMQSGPNADLGKVGGTTIGGNVNGNLFCNRNTECACEFDTFTGGLEVSLTSNRFVNTAIKMMSMQFDSSTRVGLGGRSSISNNVFHFEENPLNDFAIFLRTSLVSISNNVFYYKGASIPSDQRIFNFIASQALNNSNNGFNGTWCAGISITGNTMQMVLDPAVNTSLRLQCINPTDMSGAVISGNFMAGGVGMVLNARPERNRNVWTGNFITSGLFTAEDIWRMNSAFVGSGNYIGNGYDNTVNGIAMLSKTIPAVSDGSKIRITLDHQILTGATSDRSLYLLHIKVTGGIKNNYATYIMSSGAHDATSRADATDLKPPIDQRLNPGDTSIANLQSCFKAGYNGSGYIVLEALSTYSSANQPPTKLEYAIVPLSTNFPTI
Physico‐chemical
properties
protein length:730 AA
molecular weight: 78754,29460 Da
isoelectric point:5,07643
aromaticity:0,09589
hydropathy:-0,15521

Domains

Domains [InterPro]
DC_1559
ATT
1–180
DC_1559
G3DSA:2.10.10.80
ATT
62–133
G3DSA:2.10.10.80 IPR011050
IPR040775
RBD
63–123
IPR040775 DC_1808
YP_010054109.1
1 730
Architecture
ATT
STR
ATT 1-180 | STR 181-720 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010054109.1
1 730
Domain Start End Length (AA) Confidence
N-terminal 1 162 162 0,9897
Central domain 163 587 426 0,9905
C-terminal 588 730 142 0,9915
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-162
Central
163-587
C-terminal
588-730

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoS_swi2
[NCBI] 		2769808 Uroviricota > Caudoviricetes > Swiduovirus >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010054109.1 [NCBI]
Genbank nucleotide accession
NC_054649 [NCBI]
CDS location
range 120 -> 2312
strand -
CDS
ATGGCCACCACACCAACTAATAAACCAATTCCATCAGAAGACCCACGCGACCTTAAGTTCAATGCCGGAAAAATCGACGAGGTTGTCAACTCTGATGCGCATTACTATACCGACAGATTCGGTGTACGCCGCTGGACAATTGCTGGCTTTCAACACACCGCAGAAGAGGCCATCCGCAACTATGGCTACATTACGATGGACAGCTTCGAAGATGGTGCGACGCTGACGCTGCCCAATCAGACCCTGCGTTATGAAGCGAACGGAGAATATTATCGCTGGGATGGGGAGTTTCCAAAAATCGTCACCGCTGGTTCAACACCTGAAACAGCTGGTGGTATTGGTGTTGGTTCCTGGGTTAGTGTTGGTGATGCAGCTTTGAGAACACAGTTAGCAAACACGACTGGCGCAGATCTTGTTGGGATTATGCCATATGGCACGGTACAGGACGCCATCAAATGGGTTGTCCCAGAGGTATTCCCCGGAGGTAATGCGTCAGAAAAATTACAGGCAGCTGTAAATTATGCGGTGGCAAACAAAACAAGACTTGTCGCATCAGGCGTGTATGACGTAACAACCCCCGTCACCATCTCAGGAGACATCATTATTGATGCTTCCGCTGGAGAATTTACCTTCAATGGCATTGATTATATTTTCCATCCGCTTGGCGCAAAATCAGTAGAGATTATCGGCGGTAAGTTCACCGCAAATGCATACCACACCCAGCGTCCTCAGGTAATTTTCAATGATTACCCTGATGGGCTGGCGAATTTGCCAACGCGCGTGGTGTTAAAAGATATGCAATGCTTTAACTGCGGTGTTGGCTACATCATGGTTAACTGTCAGGACCCAACTAGCGTACATATCTCAGTTGATAATAACTACTGCAAGACTGATGACAACACAGACCAGTATATTTCTGATGCAGGAATGTCAGGTGCACAGGGTGAGGTATATCCATATCTGATGATTCTTGGAAACACGACTGCATCCGTCGACATTGGGACGCCTCGCAAGTCAATGTTCCATGTGACCAATAATACCTTTGATGTTTTTATGCAGAGTGGTCCTAATGCAGATTTGGGTAAAGTTGGTGGTACTACGATAGGCGGCAATGTTAACGGCAATCTTTTCTGCAACAGGAATACGGAATGTGCATGCGAATTTGACACTTTTACTGGTGGTCTTGAAGTATCTTTAACATCAAACCGTTTTGTTAACACTGCCATTAAAATGATGTCAATGCAATTTGATAGCAGCACTCGCGTCGGATTAGGTGGTAGATCTTCAATATCGAATAACGTATTTCATTTTGAAGAAAATCCGTTAAATGACTTTGCAATATTCTTACGGACATCACTTGTTAGCATATCTAATAATGTTTTTTATTACAAAGGTGCGAGCATTCCATCAGATCAGAGGATATTTAACTTTATAGCATCACAGGCGCTCAACAATAGTAACAATGGTTTCAACGGAACATGGTGCGCAGGTATTAGTATCACCGGTAACACAATGCAAATGGTGTTAGACCCTGCCGTAAACACGTCTCTAAGGTTGCAATGTATTAACCCGACCGATATGTCTGGGGCAGTTATATCAGGTAATTTTATGGCTGGCGGAGTAGGAATGGTGCTTAACGCCAGACCAGAAAGAAACAGAAACGTATGGACAGGTAACTTCATTACGTCAGGGTTATTTACTGCAGAAGATATCTGGCGAATGAACTCAGCTTTTGTAGGTTCAGGGAACTACATCGGCAATGGTTATGATAATACTGTTAATGGCATAGCAATGTTGAGCAAGACTATACCAGCTGTATCAGATGGTTCAAAGATAAGAATTACTCTTGACCATCAGATATTAACAGGGGCCACATCTGACCGTTCACTTTACCTTCTCCACATAAAAGTAACCGGTGGGATAAAAAACAACTACGCTACATATATCATGTCTTCTGGTGCTCATGATGCAACATCAAGAGCCGACGCAACTGACCTTAAACCACCTATTGACCAGCGTCTAAACCCCGGAGACACATCCATAGCAAACCTGCAAAGTTGCTTCAAAGCAGGCTACAACGGGAGTGGGTATATTGTGCTTGAGGCTCTTTCAACATACAGCTCGGCAAATCAACCACCAACAAAACTTGAATATGCAATAGTACCATTATCAACAAACTTCCCAACAATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
99ccc8c3f13d45dfeb47e0382bfb39db3b8d47261fbb908cc8e37754bf3fe1c3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7157
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence analysis of a novel Escherichia phage vB_EcoS swi2 Sui,B. 2021-05-25 — GenBank