Protein

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Genbank accession
YP_010667508.1 [GenBank]
Protein name
tail assembly protein
RBP type
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MMPKFFNHDSPGAPLLTGGTNNNLIQVLKFALIPSGWTLVWEDVAARKACFRNDPNEGTGCYFLVDETPASMAYMDVGEGWDDTSKTLINNVALASPWTRGTYKGASADNRQWWIVADNRTFYAQISGKFLGQPAEIVDGTTSGWYQWPFGAGDYMRFDGKPGVFIAGTWSNTASLPSQSNNSIGVTGYSLPDMNRSKPSIGVTRGADGKIASTCIGALVPAVFNSGYIIGDSSAVVITDNPYLTFSQNYLLYTSNGSANTMGVSGVLRGLWFPNFRVYTTCSGVSLDQTWRSVGNSSFSELMIFAGKDSNSNTSMWYMGVEKGKPW
Physico‐chemical
properties
protein length:327 AA
molecular weight: 35511,41240 Da
isoelectric point:5,47453
aromaticity:0,12844
hydropathy:-0,18624

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010667508.1
1 327
Domain Start End Length (AA) Confidence
N-terminal 1 14 14 0,9282
Central domain 15 213 200 0,0050
C-terminal 214 327 113 0,9989
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-14
Central
15-213
C-terminal
214-327

Taxonomy

  Name Taxonomy ID Lineage
Phage Stenotrophomonas maltophilia phage vB_SmaM_Ps15
[NCBI] 		3071007 Uroviricota > Caudoviricetes > Menderavirus >
Host Stenotrophomonas maltophilia
[NCBI] 		40324 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010667508.1 [NCBI]
Genbank nucleotide accession
NC_070951 [NCBI]
CDS location
range 18332 -> 19315
strand +
CDS
ATGATGCCGAAATTCTTCAATCACGATTCGCCTGGCGCACCCTTGCTGACTGGCGGCACAAACAACAACCTGATCCAGGTGCTCAAGTTTGCCTTGATTCCATCTGGCTGGACTCTCGTCTGGGAAGACGTGGCGGCTCGCAAGGCCTGCTTCCGCAATGACCCAAACGAGGGAACTGGGTGCTACTTTCTGGTAGACGAGACTCCAGCGTCGATGGCTTACATGGATGTGGGCGAGGGATGGGACGACACAAGCAAGACCCTGATCAACAATGTGGCTCTGGCTAGCCCATGGACTCGCGGCACCTACAAGGGAGCTTCAGCCGATAATCGTCAATGGTGGATTGTGGCGGACAATCGTACCTTCTATGCACAGATCAGTGGTAAGTTCCTGGGGCAGCCAGCCGAAATAGTGGATGGGACCACCAGCGGATGGTATCAGTGGCCCTTTGGTGCTGGCGACTACATGCGCTTTGATGGTAAGCCAGGCGTGTTCATCGCTGGCACTTGGAGCAATACCGCTTCGCTTCCATCACAGTCTAACAACTCTATTGGCGTGACCGGATACTCTCTGCCGGATATGAATCGATCAAAGCCAAGCATTGGCGTGACGAGGGGTGCTGACGGAAAGATCGCATCGACCTGCATAGGGGCATTGGTTCCAGCCGTATTCAATTCTGGATATATCATTGGTGATTCATCTGCGGTAGTCATTACTGACAATCCTTACTTGACATTCTCGCAGAATTATCTGCTATATACATCGAATGGTTCTGCAAACACAATGGGTGTCAGCGGCGTTCTTCGCGGTCTATGGTTTCCCAACTTCAGAGTCTATACTACCTGTTCTGGTGTCAGTCTAGATCAGACATGGCGTTCCGTTGGCAATAGCAGCTTCAGTGAGTTGATGATCTTTGCAGGCAAGGATAGCAACTCGAATACTAGCATGTGGTACATGGGTGTAGAAAAAGGAAAGCCTTGGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
0b18b28ed262a547e10e41ea5145af5d1f523db872fc82811a3cf2b8854612c6
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5983
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of bacteriophage vB_SmaM_Ps15 infective to Stenotrophomonas maltophila clinical ocular isolates Damnjanovic,D., Vazquez-Campos,X., Elliott,L., Willcox,M. and Bridge,W.J. 2020-06-11 — GenBank