Protein

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Genbank accession
YP_009811212.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,75
Protein sequence
MPLVKVDVGMITATGASDNTPIRANAGVLTASADESGVPSEITDESSYDETSGILTLRFENGKSIQIKGFPTASSIPPGRQGARGETGADGKDGRDGRDGAQGGIGCTGPVGPDGDEGPPGKDGRDGNPGIPGEIGPTGATGPTGNVGPTGPMGRPGPTGATGKTGTTGPTGPEGPSGKLQIVVSSTQPGNMAAGVLWVNPSIDQAATWP
Physico‐chemical
properties
protein length:210 AA
molecular weight: 20512,23170 Da
isoelectric point:4,50048
aromaticity:0,02381
hydropathy:-0,51190

Domains

Domains [InterPro]
DC_1829
ATT
1–76
DC_1829 IPR008160
PTHR24637
Unmapped
58–179
PTHR24637
DC_0656
STR
124–210
DC_0656
YP_009811212.1
1 210
Architecture
ATT
STR
ATT 1-76 | STR 77-210
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage vB_DsoM_JA29
[NCBI] 		2283031 Uroviricota > Caudoviricetes > Salmondvirus >
Host Dickeya solani MK10
[NCBI] 		1224151 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Pectobacteriaceae > Dickeya > Dickeya solani

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009811212.1 [NCBI]
Genbank nucleotide accession
NC_048053.1 [NCBI]
CDS location
range 64582 -> 65214
strand -
CDS
ATGCCTTTAGTAAAAGTTGATGTAGGCATGATCACAGCAACGGGGGCTTCCGACAATACGCCTATCCGCGCCAACGCTGGCGTGCTTACTGCATCGGCTGATGAATCTGGTGTGCCTTCGGAAATCACGGACGAATCAAGTTACGATGAAACTTCTGGAATTTTAACTCTGCGTTTTGAAAACGGAAAATCAATTCAAATAAAAGGTTTTCCAACGGCATCAAGTATTCCTCCGGGTAGACAAGGTGCGCGTGGTGAAACTGGCGCAGATGGAAAAGACGGAAGAGACGGACGCGACGGGGCGCAAGGTGGAATTGGTTGTACCGGACCAGTCGGGCCAGACGGCGATGAAGGGCCACCGGGAAAAGATGGTCGCGATGGTAATCCGGGAATTCCGGGAGAAATCGGTCCAACTGGTGCAACCGGCCCAACTGGAAATGTCGGACCAACTGGGCCGATGGGTCGCCCCGGTCCAACTGGTGCAACTGGAAAAACCGGAACAACTGGACCAACTGGACCAGAAGGCCCAAGTGGAAAATTGCAAATCGTTGTAAGTTCTACTCAACCGGGAAATATGGCGGCTGGTGTGTTGTGGGTGAATCCTTCTATTGATCAAGCTGCAACGTGGCCGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
9a0a8cafa4dbc169e3875c849c11e567a35953e548f8017f07b3a42b616ee4c1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7088
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Jumbo Bacteriophages Are Represented Within an Increasing Diversity of Environmental Viruses Infecting the Emerging Phytopathogen, Dickeya solani Day,A.W., Ahn,J. and Salmond,G.P.C. 2018 — GenBank