Protein

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Genbank accession
YP_009811212.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,75
TF
Evidence Phold
Probability 1,00
Protein sequence
MPLVKVDVGMITATGASDNTPIRANAGVLTASADESGVPSEITDESSYDETSGILTLRFENGKSIQIKGFPTASSIPPGRQGARGETGADGKDGRDGRDGAQGGIGCTGPVGPDGDEGPPGKDGRDGNPGIPGEIGPTGATGPTGNVGPTGPMGRPGPTGATGKTGTTGPTGPEGPSGKLQIVVSSTQPGNMAAGVLWVNPSIDQAATWP
Physico‐chemical
properties
protein length:210 AA
molecular weight: 20512,23170 Da
isoelectric point:4,50048
aromaticity:0,02381
hydropathy:-0,51190

Domains

Domains [InterPro]
PTHR24637
58–179
PTHR24637
IPR008160
77–134
IPR008160
YP_009811212.1
1 210
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage vB_DsoM_JA29
[NCBI] 		2283031 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009811212.1 [NCBI]
Genbank nucleotide accession
NC_048053.1 [NCBI]
CDS location
range 64582 -> 65214
strand -
CDS
ATGCCTTTAGTAAAAGTTGATGTAGGCATGATCACAGCAACGGGGGCTTCCGACAATACGCCTATCCGCGCCAACGCTGGCGTGCTTACTGCATCGGCTGATGAATCTGGTGTGCCTTCGGAAATCACGGACGAATCAAGTTACGATGAAACTTCTGGAATTTTAACTCTGCGTTTTGAAAACGGAAAATCAATTCAAATAAAAGGTTTTCCAACGGCATCAAGTATTCCTCCGGGTAGACAAGGTGCGCGTGGTGAAACTGGCGCAGATGGAAAAGACGGAAGAGACGGACGCGACGGGGCGCAAGGTGGAATTGGTTGTACCGGACCAGTCGGGCCAGACGGCGATGAAGGGCCACCGGGAAAAGATGGTCGCGATGGTAATCCGGGAATTCCGGGAGAAATCGGTCCAACTGGTGCAACCGGCCCAACTGGAAATGTCGGACCAACTGGGCCGATGGGTCGCCCCGGTCCAACTGGTGCAACTGGAAAAACCGGAACAACTGGACCAACTGGACCAGAAGGCCCAAGTGGAAAATTGCAAATCGTTGTAAGTTCTACTCAACCGGGAAATATGGCGGCTGGTGTGTTGTGGGTGAATCCTTCTATTGATCAAGCTGCAACGTGGCCGTAG

Tertiary structure

PDB ID
9a0a8cafa4dbc169e3875c849c11e567a35953e548f8017f07b3a42b616ee4c1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7088
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Jumbo Bacteriophages Are Represented Within an Increasing Diversity of Environmental Viruses Infecting the Emerging Phytopathogen, Dickeya solani Day,A.W., Ahn,J. and Salmond,G.P.C. 2018 — GenBank