Protein

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Genbank accession
YP_009844543.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAGFKQSLKEHRPVSLITFDGDQFDPVLRTSLANPPVILDESEYQNNAILMNEQPDFPGYRMGMSSLVGLEQTDQYAMAFGYNGYNALNPSGWTKTLLQVPHIAALGFPNNNGSFSLSFMYYRDQDENAGWRETRRSLGQSYTDTLQRPILRKAGVFDIWWEDYWSSQHVVALVGPDNKRINIRNDTLDGATQSGSASRFYKRNLLFTCVYDCQLTSPGVYTCNWIIYINGRERARTTWTALDTPPVVNAVSPIEIGGRINSAAVHNDRNTSFVMLDQIGVFNKAFTPDQVAWLWKKCLAYDDMIHASYPNNFWTMGDADSQTNFAMVDSSRSSDRRDGVYIGGNQLAIRGRAGPPRLGGSAVTFTNGGMAAVHYQPSGYSPVWNPDADYTIELWTTFSNATRGVIFSNQRDDRPFPGMLLECNRRNNQDYPGALQFSVDSSTFVQTKQYKADNSPYHFGDGQFHHVVMIRRGTTIELWVDSELHATANTAINRVSSPGPGQIYLMSTMPGALNVNGTMCYLITYPYALQSQEIKARYSYRYLYRIQGNVTLQGSPYQANVRVLNTMTGELITQTTSDQSTGNYSINLYDNTLLDLYALNIQDPNIRYRIYGPIRPAELEDLPQ
Physico‐chemical
properties
protein length:624 AA
molecular weight: 70283,76500 Da
isoelectric point:5,84853
aromaticity:0,11699
hydropathy:-0,43974

Domains

Domains [InterPro]
G3DSA:2.60.120.200
STR
26–296
G3DSA:2.60.120.200 IPR013320
G3DSA:2.60.120.200
STR
26–295
G3DSA:2.60.120.200 G3DSA:2.60.120.200
IPR013320
STR
38–298
IPR013320 DC_1745
PF13385
LEC
384–535
PF13385
YP_009844543.1
1 624
Architecture
STR
STR
RBD
STR 26-298 | STR 360-556 | RBD 557-613 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009844543.1
1 624
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,8295
Central domain 11 209 200 0,5036
C-terminal 210 624 414 0,5161
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-624

Taxonomy

  Name Taxonomy ID Lineage
Phage Stenotrophomonas phage YB07
[NCBI] 		2555548 Uroviricota > Caudoviricetes > Menderavirus >
Host Stenotrophomonas maltophilia
[NCBI] 		40324 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009844543.1 [NCBI]
Genbank nucleotide accession
NC_048755 [NCBI]
CDS location
range 129695 -> 131569
strand +
CDS
ATGGCAGGTTTCAAACAATCCTTGAAAGAACATCGTCCAGTTTCGCTGATCACGTTTGACGGTGACCAGTTCGATCCTGTGCTGCGTACTTCGCTTGCCAATCCCCCGGTGATCCTGGATGAGTCGGAGTATCAGAACAACGCTATCCTCATGAACGAGCAGCCAGACTTCCCGGGCTATCGCATGGGTATGAGCTCGCTTGTCGGGCTAGAGCAGACTGACCAATACGCTATGGCGTTCGGCTATAACGGCTACAATGCCTTGAACCCGAGCGGCTGGACCAAGACTCTGCTGCAGGTTCCACATATCGCAGCACTCGGCTTCCCAAACAACAATGGCTCGTTCAGTCTGTCGTTCATGTACTATCGCGATCAAGACGAGAACGCTGGCTGGCGTGAGACTCGACGCTCCTTGGGGCAATCTTACACCGATACGCTTCAGCGTCCGATCCTCCGTAAGGCGGGTGTATTTGACATTTGGTGGGAGGATTACTGGTCATCTCAGCACGTTGTGGCTTTGGTTGGCCCAGACAACAAGCGCATCAACATCCGCAATGACACCTTGGACGGTGCAACTCAATCAGGATCGGCTAGCCGATTCTACAAGCGCAACCTGCTGTTCACATGCGTCTATGACTGTCAGCTGACCAGCCCAGGTGTCTACACTTGCAACTGGATCATCTACATCAACGGCAGAGAGCGCGCTCGTACCACATGGACAGCGCTTGACACTCCGCCTGTGGTGAATGCCGTTTCACCTATCGAAATTGGTGGGCGCATCAACTCAGCCGCTGTCCACAATGACCGCAACACCTCGTTCGTTATGCTCGATCAGATTGGCGTGTTCAACAAAGCATTCACCCCGGATCAGGTGGCGTGGCTGTGGAAGAAGTGCTTGGCTTACGACGATATGATCCATGCGTCCTATCCCAACAACTTCTGGACGATGGGTGACGCAGATAGCCAAACCAACTTTGCTATGGTTGACAGTTCGCGTTCTAGCGATAGACGAGATGGTGTATACATTGGTGGCAACCAGTTGGCAATCCGTGGTCGGGCTGGTCCTCCACGTCTTGGTGGTTCGGCTGTCACGTTCACCAATGGTGGCATGGCGGCTGTCCACTATCAACCCAGCGGTTACTCACCAGTCTGGAATCCAGACGCCGACTATACCATTGAGCTATGGACGACATTCTCCAACGCAACCCGTGGCGTGATCTTCTCGAATCAGCGAGATGACCGTCCTTTCCCAGGTATGCTGCTGGAATGCAATCGTCGCAATAATCAAGACTATCCGGGAGCATTGCAGTTCTCGGTGGACAGCTCGACGTTTGTCCAGACTAAGCAATACAAGGCGGACAACTCACCTTACCACTTCGGTGACGGTCAGTTCCATCATGTGGTCATGATCCGTCGAGGCACGACCATTGAGCTATGGGTTGACAGTGAGCTGCACGCCACAGCCAACACAGCCATCAATCGTGTAAGCTCTCCGGGTCCGGGTCAGATCTATCTGATGAGCACGATGCCCGGCGCGCTGAACGTGAACGGCACTATGTGCTACCTCATCACCTATCCATATGCTTTGCAGAGTCAAGAGATCAAGGCGCGGTACAGTTACCGCTACTTGTATCGCATTCAGGGCAATGTGACGCTGCAGGGTTCACCATATCAAGCGAACGTTCGTGTCTTGAACACGATGACAGGTGAACTGATCACCCAGACCACGAGCGATCAGTCAACAGGCAACTACTCAATCAACCTGTATGACAACACCTTGCTCGACCTGTATGCTCTAAATATCCAGGACCCGAACATTCGCTATCGTATCTATGGGCCTATCCGCCCTGCAGAACTTGAGGATCTACCGCAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
7cc8635d9b7b958c8a04afd7aeaee5cb2246fb67431857606786ca0b0f52e1b3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7448
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50