Protein

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Genbank accession
APD19649.1 [GenBank]
Protein name
tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,61
Protein sequence
MGLISQSIKNLKGGISQQPDILRFAEQGAEQINGWSSETEGLQKRAPLVFTKTIAYGDELGRAPLIHLINRDSTEQYYVVFTGSGIRVFDLNGKEYSVSGDMAYVRCANPRDDLRMVTVADYTFIVNRNTVVQENTDPIYTLREDGDCLINIRGGQYGRTLSIHINGGTQASVKIADGSAPEQVEQTDAQWLVRSLATQLRTSMGGWTINEGSGYIHVIAPASDNIKSLETKDGYGNQLMNGVMHSSQSFSKLPIEAPDGYTVRIVGDTSKTSDAFYVQYDATRKVWKEIVGWNVAKGLHNHTMPWALIRQPDGSFKMDMLPWAHRSCGDMDTNPTPSLVGQTINDVFFFRNRLGFLAGENIVMSRTSKYFSLFPASVANLSDDDPIDVAVSHNRISILKYAVPFSEELLLWSDQAQFILSAQGILSPKTVGLNLTTEFDVSDTARPYGVGRGIYFASPRASYTSLNRYYAVQDVSSVKSAEDMSAHIPSYIPNGVFSIRGSGTENFVSVLSSNAPSKVFVYKFLYLNEEVAQQSWSHWEFGSDVTVLASDSIGSTMYLMLRNQTHTWMARVNFTKNSIDFPNEPYRIYIDNKLEYTIPQGSYNDDTYSTAIQVNHVYGMSIYQGKIYVVATDGQVLDFEPPIGGWQGGTPLIHLNGNWEGQEVYLGMAIDFRYVFSKFLIKKTAEDGSTATEDIGRLQLRRAWVNYEQSGAFIIEVENTSRLFRYDMSGARLGSNALRAGNLNVGTGQFRFPVVGNASMNIVRILSDHTTPLNVIGCGWEGNYLRRSSGI
Physico‐chemical
properties
protein length:791 AA
molecular weight: 87932,76090 Da
isoelectric point:5,62919
aromaticity:0,10746
hydropathy:-0,25664

Domains

Domains [InterPro]
IPR058003
TTP
1–791
IPR058003
APD19649.1
1 791
Architecture
TTP
TTP 1-791
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
APD19649.1
1 791
Domain Start End Length (AA) Confidence
N-terminal 1 139 139 0,9955
Central domain 140 342 204 0,1609
C-terminal 343 791 448 0,2470
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-139
Central
140-342
C-terminal
343-791

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage PP74
[NCBI] 		1916101 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Berlinvirus
Host Pectobacterium wasabiae
[NCBI] 		55208 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
APD19649.1 [NCBI]
Genbank nucleotide accession
KY084243 [NCBI]
CDS location
range 23041 -> 25416
strand +
CDS
ATGGGACTTATTTCACAATCAATTAAGAACCTCAAGGGAGGTATCAGCCAACAGCCAGACATCCTACGCTTTGCCGAGCAAGGGGCTGAGCAAATCAATGGCTGGTCTTCCGAGACTGAGGGTCTACAGAAACGTGCTCCACTTGTCTTCACAAAGACCATTGCCTACGGTGATGAATTAGGTAGAGCGCCTCTTATTCACTTAATCAACCGAGATAGCACGGAACAATATTACGTTGTGTTCACAGGAAGTGGAATCCGAGTGTTCGACCTCAACGGGAAGGAGTATTCTGTCTCCGGTGATATGGCCTACGTTCGATGTGCCAACCCAAGAGATGACTTGCGGATGGTCACAGTGGCTGACTATACGTTCATCGTTAACCGAAATACTGTAGTACAGGAGAACACCGACCCTATCTATACGCTGCGTGAGGATGGAGACTGTCTGATTAACATTAGGGGAGGCCAGTATGGTAGAACCTTGAGTATCCACATCAATGGCGGCACACAGGCTTCCGTGAAGATTGCTGATGGTAGTGCCCCTGAACAAGTGGAACAGACGGATGCTCAATGGCTCGTTAGGAGCCTTGCTACACAACTGCGCACCTCAATGGGTGGATGGACTATCAACGAAGGCTCCGGGTACATCCATGTTATTGCCCCTGCTAGTGACAACATTAAGTCTCTTGAGACCAAAGATGGTTATGGGAACCAGTTGATGAATGGTGTTATGCATTCCAGCCAGTCGTTCTCTAAGTTGCCTATCGAGGCTCCTGATGGGTACACTGTTCGTATCGTAGGTGATACCTCTAAGACCTCCGATGCGTTCTACGTTCAGTATGATGCAACCCGTAAAGTGTGGAAGGAAATTGTTGGCTGGAACGTTGCCAAGGGTCTACATAACCACACAATGCCGTGGGCGCTTATTCGTCAACCTGATGGTTCCTTTAAGATGGACATGCTGCCGTGGGCGCACCGCTCTTGTGGCGACATGGATACGAACCCTACGCCATCATTGGTGGGGCAGACTATCAACGATGTGTTCTTCTTCCGAAACCGCTTAGGGTTCCTCGCTGGTGAGAACATTGTGATGTCACGTACCTCAAAGTATTTCTCACTGTTCCCTGCGTCAGTGGCTAACCTGTCCGACGATGACCCAATTGACGTGGCGGTATCTCACAACCGTATCTCAATCCTGAAGTACGCTGTACCGTTCTCCGAAGAGTTGCTCCTATGGTCAGACCAAGCACAGTTCATACTGTCTGCTCAAGGTATCCTCTCACCGAAGACTGTAGGGTTGAACCTCACGACCGAGTTTGATGTGTCAGACACGGCGAGACCTTATGGGGTTGGTCGAGGGATTTACTTTGCGTCACCCCGTGCTTCGTACACTTCACTGAACCGTTACTATGCGGTACAGGATGTTAGCTCCGTGAAGTCTGCTGAGGACATGAGTGCGCACATTCCAAGCTACATCCCGAACGGTGTGTTCTCTATTCGAGGCTCCGGGACTGAGAACTTTGTATCCGTCTTATCTTCTAATGCTCCGAGCAAGGTGTTCGTCTACAAGTTCCTCTATCTGAATGAAGAGGTTGCACAACAGTCGTGGTCACACTGGGAGTTCGGGAGTGACGTAACAGTTCTAGCCTCCGACTCTATTGGCTCGACCATGTACTTGATGCTTCGTAACCAGACTCACACATGGATGGCAAGGGTGAACTTCACGAAGAACTCTATTGATTTCCCTAACGAGCCTTATCGTATCTACATTGATAACAAGCTCGAGTATACTATTCCACAAGGAAGCTACAATGATGATACCTACAGCACTGCAATCCAAGTCAACCACGTGTATGGAATGAGCATCTATCAAGGAAAGATTTACGTTGTGGCTACTGACGGTCAGGTTCTGGACTTTGAGCCTCCTATTGGTGGATGGCAGGGAGGTACTCCACTTATTCATCTCAACGGAAACTGGGAGGGACAAGAGGTATACTTAGGGATGGCTATCGACTTCCGTTATGTGTTCTCTAAGTTCCTAATCAAGAAGACAGCCGAGGATGGTTCAACAGCTACGGAAGATATCGGACGCTTGCAGTTGCGTAGGGCATGGGTAAACTATGAGCAATCTGGTGCCTTTATTATTGAGGTTGAGAATACATCTAGACTGTTCAGGTATGACATGTCAGGTGCTCGGTTAGGGTCTAATGCATTACGCGCTGGAAACCTAAACGTTGGCACAGGTCAATTCCGATTTCCGGTTGTCGGTAATGCTTCGATGAACATCGTCCGTATCCTATCTGACCACACCACTCCACTCAACGTGATTGGATGTGGCTGGGAAGGTAACTACCTGCGACGTTCTTCTGGTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3f697ca437ef4a19697cd038423106f4d604344f42f6949e902bce1d565872e5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9026
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50