Protein

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Genbank accession
QFG06498.1 [GenBank]
Protein name
virion protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAVSISTITKSAGWARSDVILALEEAFEIVEFHGATQTGIVTNILYQNGGTDDGSNNGQYYTDIEAVSTSGIGTGASFDIYRNSGTVSAINVNRPGYGYTNGEYLVLAASDIGAAVGLGITVSVAGRGSATSFGSTTTFYVKNVGVGSEYPFGVLRHEIESNKKYGTICRAFQVWSDNQISFGVGPFFHPYSAKYDPIAVNESYNDSDNGTTGYQYQFVGKRVYDAVSVNNQVIPEDFYSAWYQPSSTDAFDGDGNYGAASINQTGQCFNGNNTGSNIKFATATSPTTHDLKLRIYQSTLDPKFAIFSFTQPSVAGSKISDNTFLTFFFHNYTSSLWDYDHQWNGGLTLIRPAASSASNAGNYCEINFDTFLGGNANYDSSYSSSYYYNFGSHGGGRSALMGYGSVSGSYYDGDAEIHLTTQYRATGTNYAAMQTNWYSTPTDYNQAVWGSSSQKIYVRRSTDIKDPYTMDASQNYNAVIKGIPVCSSMVPCPYYLPDDFVLIDFRYATSETDIQQGDTITISGSEVYEVITGSYNQYVETAGILLCARKV
Physico‐chemical
properties
protein length:551 AA
molecular weight: 59890,70230 Da
isoelectric point:4,64610
aromaticity:0,14156
hydropathy:-0,29564

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QFG06498.1
1 551
Domain Start End Length (AA) Confidence
N-terminal 1 20 20 0,0180
Central domain 21 219 200 0,5593
C-terminal 220 551 331 0,8771
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-20
Central
21-219
C-terminal
220-551

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SCSM1
[NCBI] 		2588487 Uroviricota > Caudoviricetes > Pantevenvirales > Zhoulongquanvirus > Zhoulongquanvirus esscess
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QFG06498.1 [NCBI]
Genbank nucleotide accession
MK867354 [NCBI]
CDS location
range 202938 -> 204593
strand +
CDS
ATGGCAGTATCCATCAGTACGATTACAAAATCAGCAGGTTGGGCAAGATCTGATGTTATTCTTGCACTTGAAGAAGCATTTGAAATTGTAGAGTTCCATGGTGCAACTCAGACTGGCATCGTTACAAATATCCTTTATCAAAATGGTGGAACAGATGATGGATCTAATAATGGACAATATTACACTGATATAGAAGCAGTATCTACTTCTGGTATTGGAACTGGAGCAAGTTTTGATATCTACAGGAATAGTGGTACTGTATCTGCAATAAATGTCAATCGTCCTGGTTATGGGTATACTAATGGAGAATACTTAGTTCTTGCTGCTTCTGATATTGGTGCAGCAGTTGGTTTAGGAATTACCGTTAGTGTTGCAGGAAGAGGTTCAGCAACATCATTTGGATCTACAACTACATTTTATGTTAAAAATGTTGGTGTAGGATCTGAATATCCATTTGGTGTACTGAGACACGAAATTGAATCAAATAAAAAATATGGAACTATTTGTAGAGCATTCCAGGTATGGAGTGATAACCAAATTTCTTTTGGTGTAGGACCATTCTTCCATCCATATTCAGCAAAATATGATCCTATTGCAGTAAATGAGTCTTATAATGATAGTGATAATGGGACTACTGGATATCAATACCAATTTGTCGGAAAAAGAGTCTATGATGCTGTATCCGTTAATAATCAAGTAATTCCTGAAGATTTTTATAGTGCTTGGTATCAACCAAGTTCTACTGATGCTTTTGATGGAGATGGCAATTACGGCGCGGCATCAATCAACCAAACTGGTCAATGTTTTAATGGTAATAATACAGGAAGCAATATCAAATTTGCTACAGCAACATCACCAACAACACATGATCTTAAGTTAAGAATCTATCAATCTACTTTAGATCCTAAGTTTGCTATATTTTCATTTACTCAACCATCTGTAGCAGGATCAAAAATCAGTGATAATACATTTTTAACATTCTTCTTCCATAATTATACATCTTCCTTGTGGGATTATGATCATCAATGGAATGGTGGTTTAACATTGATCAGACCAGCAGCATCTTCAGCAAGTAATGCAGGAAATTATTGTGAGATAAATTTTGATACTTTTCTAGGTGGAAATGCAAACTATGATTCTTCTTATAGTTCTAGTTATTACTATAATTTTGGTAGTCACGGTGGTGGAAGATCTGCACTAATGGGATATGGGTCTGTATCTGGATCATATTATGATGGTGATGCAGAAATACATTTAACAACTCAGTATAGAGCAACTGGAACAAATTATGCTGCAATGCAAACAAATTGGTACAGCACTCCCACTGATTACAATCAAGCTGTCTGGGGTTCTAGTTCACAAAAAATATATGTTAGAAGAAGTACGGATATAAAAGATCCCTACACTATGGATGCATCACAAAATTATAATGCAGTTATCAAAGGCATTCCTGTATGTTCAAGTATGGTTCCTTGTCCATATTATCTACCAGACGATTTTGTATTGATTGATTTCAGATATGCGACTTCAGAAACAGATATTCAGCAAGGTGATACAATTACAATCAGTGGTTCTGAAGTTTATGAAGTAATTACTGGTTCATACAATCAGTATGTAGAAACTGCAGGAATCTTACTCTGTGCAAGGAAAGTCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
541f9d8ece9fe1f650027b1c2a79879ccd9c5f8b03aa0f7892a2a60eb7ccea6e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4012
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic and proteomic characterization of cyanophage S-SCSM1 provides new insights into understanding the viral gene diversity and phage-host interactions Wang,Q., Xu,Y., Jiao,N. and Zhang,R. 2022-10-26 — GenBank