Protein

View in Explore
Genbank accession
APD20657.1 [GenBank]
Protein name
tail fibers protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MALTDLVRAQYPVLGLDYVDVRDCGAKGDGVTDDCLAIQTAIREAYAKGITRVFVPGTRSFYRCTYPVFLLSGIELFGVGPASRIVFENPVFSKGRGAIVIGSSYEINRDQVFAAYDSGVWAGKSTANTSYVNPAQKQYIRDNPSFIECTGACVHDLRLDAVYIAPHTDGGYGVNFVNSQDCQAYNISGSGWTQLIGMGSDTPPETPSNHRCKAWNLEVVEPNQTRTYYSIGFISNSTNCSIVGAVQHKPMKDGTPNGSAVAFNLCEDCEVLDITVHNLGRTQSSEGVLLNNLVGCRAENIIIKGTPTSKVISAVSHYYTDASFNIADRPNVLRNITAVNCDQAVSLRGKYVIVDSVSPYNCGYDLYFGNNNATNNQVMFEPKSIRFGGSNTQAWFLQNNTVKGWQRRYHHLRPAVLLLNDKGDTKSWNNNKLVSTKLDVDLQFQHSLGEEFKAIDDVRCFLRFNNAADAAHLKGSTVQMSLRQMLAFDGNISEVPYTALTNTRVAASGMGDTSLVASVTGGTGLVRMDDATNGLAYSWTLDLSMTNNTDFNYMKELRVAGYK
Physico‐chemical
properties
protein length:563 AA
molecular weight: 61655,56970 Da
isoelectric point:6,22105
aromaticity:0,09591
hydropathy:-0,21670

Domains

Domains [InterPro]
DC_0953
STR
2–442
DC_0953
IPR012334
STR
15–294
IPR012334 DC_0117
IPR011050
STR
15–405
IPR011050
IPR024535
ENZ
19–94
IPR024535
APD20657.1
1 563
Architecture
STR
RBD
STR 2-442 | RBD 443-563
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
APD20657.1
1 563
Domain Start End Length (AA) Confidence
N-terminal 1 33 33 0,9013
Central domain 34 412 380 0,9883
C-terminal 413 563 150 0,9499
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-33
Central
34-412
C-terminal
413-563

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage KPV811
[NCBI] 		1913574 Uroviricota > Caudoviricetes > Autographivirales > Slopekvirinae > Drulisvirus
Host Klebsiella pneumoniae
[NCBI] 		573 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
APD20657.1 [NCBI]
Genbank nucleotide accession
KY000081.1 [NCBI]
CDS location
range 416 -> 2107
strand -
CDS
ATGGCACTGACAGATTTAGTAAGAGCACAATATCCCGTACTGGGTTTAGATTACGTGGACGTACGGGATTGTGGCGCAAAGGGTGACGGGGTAACTGATGACTGCTTAGCAATCCAAACAGCAATTAGGGAGGCTTATGCCAAGGGCATTACCCGGGTATTCGTTCCTGGTACACGCTCATTTTATCGGTGCACCTACCCCGTGTTCCTGCTGAGCGGTATTGAGTTATTCGGGGTTGGTCCTGCCTCCAGAATTGTTTTTGAAAACCCCGTGTTTAGTAAAGGGCGTGGGGCTATAGTGATAGGCAGTTCCTACGAAATTAACCGGGACCAGGTATTTGCTGCCTATGATAGCGGTGTGTGGGCCGGTAAAAGTACCGCCAATACCAGTTACGTTAATCCAGCACAGAAGCAGTACATCCGAGACAATCCGAGCTTTATTGAGTGTACTGGTGCGTGTGTACACGACCTACGACTGGATGCAGTTTATATTGCCCCACATACAGATGGAGGTTATGGTGTTAACTTCGTAAACTCTCAAGATTGTCAAGCTTATAATATCTCGGGATCTGGTTGGACGCAGCTTATTGGTATGGGTTCTGATACACCGCCTGAAACCCCGTCTAACCACCGGTGTAAAGCCTGGAACCTGGAGGTGGTTGAGCCTAACCAGACCAGGACCTACTATAGTATCGGCTTCATCAGCAACAGTACTAACTGTAGTATTGTTGGAGCAGTACAGCATAAGCCTATGAAGGATGGTACACCTAATGGTAGCGCCGTGGCATTTAATCTGTGCGAAGACTGTGAGGTGCTTGATATTACAGTACACAACCTGGGGCGCACCCAGTCCTCTGAGGGAGTACTGCTAAATAACCTGGTAGGGTGCAGGGCTGAGAATATCATTATCAAGGGTACTCCTACCTCCAAAGTAATTAGTGCGGTATCTCACTATTATACAGATGCCAGCTTTAATATCGCGGACCGGCCGAACGTGCTCCGCAATATTACAGCGGTTAACTGCGACCAAGCAGTATCGTTGCGAGGTAAGTACGTCATTGTTGATAGTGTAAGCCCATATAACTGTGGTTATGACCTCTACTTTGGTAACAACAACGCAACCAACAACCAGGTGATGTTTGAGCCTAAAAGCATTCGCTTTGGTGGTTCTAATACGCAAGCCTGGTTCTTACAGAATAACACTGTAAAAGGCTGGCAGAGACGTTACCACCACCTGCGCCCGGCCGTGTTGCTACTGAATGATAAGGGGGACACGAAGAGTTGGAACAACAACAAGTTGGTATCCACTAAATTGGATGTGGACTTGCAGTTCCAGCATAGCTTGGGGGAAGAGTTTAAAGCTATCGACGATGTACGCTGCTTCCTGCGATTCAACAACGCAGCGGACGCCGCACATCTCAAAGGTAGCACTGTACAGATGTCTCTTCGGCAGATGCTGGCATTTGATGGTAATATCTCGGAGGTTCCATATACCGCCTTGACCAATACTAGGGTGGCGGCGTCTGGTATGGGTGACACGAGTCTGGTTGCTAGTGTAACCGGAGGTACAGGGTTGGTGCGGATGGATGATGCTACCAATGGTTTGGCTTATAGTTGGACCCTTGACTTGAGTATGACCAACAACACTGACTTTAACTATATGAAAGAACTGAGAGTAGCGGGGTACAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
af3e14bfb51cbacf67935b9f1c3da93434170a4e19ad666ec3e61459607e75ba
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6887
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Antibacterial composition for prophylaxis and treatment of hospital infections (variants), strains of bacteriophages, used for obtaining thereof Aleshkin,A.V., Volozhantsev,N.V., Verevkin,V.V., Krasilnikova,V.M., Myakinina,V.P., Popova,A.V. and Svetoch,E.A. 2016-10 — GenBank