Protein

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UniProt accession
A0A8S5LHM1 [UniProt]
Protein name
Baseplate structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,74
TF
Evidence RBPdetect2
Probability 0,77
Protein sequence
MALVNKPDESIFASSAKQGEVDNFPDLLRGWGITFEQTQGIPPMEWFNFLFKRLDEKHAYLMQRGLPEWSATQDYTKGSCVQFDGVSYRALKNSKNNSPNESNSQYWVRWGFALSEIARATLTQYGLTQLYTGYNSQREDLALTPKTAFLLKQLIDSNARALGNVIPNSKKSSAVNSNSNDTVATSAAVKTAYDKGVDAKNAADNAQRTANSANDNANARVAKSGDTMDGNLVIDSQSNAWSGIALKNKQGKSLVYEVTPDSEPYFGSMIYRDGAGHNIKHLRLPKRNGEIALKEDVDDKVSKSGDTMTGPLNINYGDYSLINQFNLSGKFARIEVTPDDQSNFYKLSYWSNDTELHSALLPKRGPWKVVAYEDWVNNGYVPRTGDTLINGHPTFEQQGGFITIKSTGVNWAAIDYKVWNSPVPLVTTQAEDLGNFSGAFNIYTTPEGTDYNTDRRAKTAQIHHNGRIWTNRYGWLDEKFAPANDTHKKSRCHNHWFPSHYAGAEVVDLPVNDAGGIRITWMGIKLPNYQPPYVDIYLPMAYSGFAKATVSDDGGATFSYGAEMIGNNIVRVYCKQSVAIGFNLQVIGWTNF
Physico‐chemical
properties
protein length:592 AA
molecular weight: 65804,45240 Da
isoelectric point:6,61404
aromaticity:0,11318
hydropathy:-0,54122

Domains

Domains [InterPro]
DC_1934
STR
1–319
DC_1934
G3DSA:2.10.10.20
ATT
53–112
G3DSA:2.10.10.20 IPR005068 DC_1921
IPR003610
CBM
66–110
IPR003610
IPR036573
STR
66–110
IPR036573
cd12215
STR
67–104
cd12215
A0A8S5LHM1
1 592
Architecture
STR
ATT
STR
STR 1-52 | ATT 53-112 | STR 113-516 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A8S5LHM1
1 592
Domain Start End Length (AA) Confidence
N-terminal 1 227 227 0,9463
Central domain 228 426 200 0,2617
C-terminal 427 592 165 0,9173
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-227
Central
228-426
C-terminal
427-592

Taxonomy

  Name Taxonomy ID Lineage
Phage Myoviridae sp. ctVDo27
[NCBI] 		2823548 Uroviricota > Caudoviricetes >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DAD69399.1 [NCBI]
Genbank nucleotide accession
BK014720 [NCBI]
CDS location
range 27353 -> 29131
strand +
CDS
ATGGCATTAGTAAACAAGCCAGATGAAAGCATTTTTGCATCATCTGCAAAACAAGGCGAGGTCGATAATTTCCCTGACTTATTGCGTGGTTGGGGGATTACATTCGAGCAAACTCAAGGCATCCCTCCTATGGAATGGTTTAATTTCCTATTTAAACGCCTAGACGAAAAACACGCCTACTTAATGCAACGAGGCTTGCCAGAGTGGTCTGCTACACAAGACTATACAAAAGGCTCTTGCGTGCAGTTTGATGGGGTGAGTTATCGGGCGTTAAAGAACAGTAAAAATAACAGCCCGAATGAATCAAATTCACAGTATTGGGTGCGTTGGGGGTTTGCACTAAGCGAAATTGCTAGAGCCACATTAACGCAATATGGTTTAACACAACTTTATACCGGCTATAACAGCCAGCGTGAAGATTTAGCATTAACCCCGAAGACGGCATTTTTGCTAAAACAACTGATTGATTCAAATGCGCGCGCGCTAGGAAATGTTATTCCCAACAGCAAAAAATCCTCAGCAGTCAACAGTAACAGCAACGATACCGTGGCAACCTCGGCGGCAGTCAAGACAGCTTACGATAAAGGCGTTGATGCCAAGAATGCGGCAGACAATGCACAACGGACTGCTAATTCGGCAAATGATAATGCCAACGCCCGTGTCGCTAAATCAGGCGACACGATGGATGGTAATCTGGTCATTGATAGCCAATCTAATGCTTGGTCAGGTATTGCGCTAAAAAATAAGCAAGGTAAATCCCTTGTTTACGAGGTTACACCGGACAGTGAGCCTTATTTTGGCTCGATGATCTATCGTGATGGGGCGGGGCACAATATCAAACATCTCAGATTGCCAAAACGTAATGGAGAGATAGCGCTAAAAGAGGATGTCGATGACAAGGTATCAAAATCAGGCGATACCATGACCGGGCCGCTAAACATAAATTATGGTGATTACAGTTTAATTAACCAATTTAATCTTAGCGGCAAATTTGCCCGCATTGAGGTCACGCCGGATGACCAATCCAATTTTTACAAGCTAAGCTACTGGAGCAATGATACTGAGCTACATTCCGCGCTTTTGCCGAAACGAGGACCTTGGAAAGTCGTGGCATATGAGGACTGGGTTAATAATGGATATGTCCCTCGTACAGGCGATACGCTGATTAATGGGCATCCGACATTCGAGCAACAAGGTGGTTTTATCACCATTAAGAGCACAGGTGTTAACTGGGCTGCTATTGACTATAAAGTCTGGAATTCGCCCGTACCGCTAGTTACAACACAGGCAGAAGACCTCGGTAATTTTTCAGGGGCATTTAATATTTACACTACACCAGAAGGGACAGATTACAACACAGACAGAAGGGCGAAAACAGCCCAAATTCACCATAACGGACGCATCTGGACCAACCGTTATGGGTGGTTAGATGAGAAATTCGCGCCAGCAAACGACACGCATAAAAAGTCACGATGCCACAATCATTGGTTTCCGTCGCACTATGCTGGTGCGGAGGTCGTTGACCTCCCAGTTAACGATGCAGGTGGAATACGCATTACCTGGATGGGGATTAAGTTACCTAACTATCAACCGCCATACGTAGATATCTATCTGCCGATGGCATACAGTGGATTTGCCAAAGCCACTGTATCTGATGATGGTGGTGCAACATTTAGTTATGGTGCCGAGATGATAGGTAACAATATTGTAAGGGTATATTGCAAACAGTCGGTTGCTATTGGATTTAACTTGCAAGTCATTGGTTGGACTAACTTTTAA

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0005576 extracellular region Cellular Component IEA:InterPro (UniProt)
GO:0030246 carbohydrate binding Molecular Function IEA:InterPro (UniProt)
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds Molecular Function IEA:InterPro (UniProt)
GO:0005975 carbohydrate metabolic process Biological Process IEA:InterPro (UniProt)
GO:0046718 symbiont entry into host cell Biological Process IEA:InterPro (UniProt)
GO:0019062 virion attachment to host cell Biological Process IEA:InterPro (UniProt)

Tertiary structure

PDB ID
0693842d2defd6ace85c52c917f9729535acd3dab88f1674a00aebbfc935a6cd
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8433
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50