Protein

View in Explore
Genbank accession
WNO23508.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MVDPINITDVQANETNVDWYADGERANSLVLNRPIKQIAGIVNEVINDLYGDGSSGISERIRKAQQAVIDGEIYAGANDQYLVVNDTIPANTRFVSVQVDGKTLVLLSADGSLLSGNVDAIGTSFDSFREVSATIATNPVALVTLETYMYRQGNLAIGWGYVGDGVVDDAPSLNKALQDSNLVITPVGTTPLLNSKLTVGDSTLNFMFSEVLADHNDQVFTLSSGKVLNAIIDGNAMDHTTYPSEVLPGDGATIKNVFYKNFHGITAYQTYPIKLPLFGAKNFVIEDVQMDNITQDDNGAVTGKGFVGGIFIESATLGTQETTSSGRVKGLTASNIYSVDAGSGVVQDSDLIRGYWDPINGDISTLKWDIDFIDITARNVGKRVFKTGGINGCTIRNVRCYKDDGNGDMYSVISLTSESSDWVIDGVVGEGDFARGIEFTGNDHLVENVNLKSTAATTGYGLQMGGAIGIVRRARVSKVHLEGFSSGIYFYDSFDSTISQATLRDNASSVLTFNASGGNVNSIKDFDIVGGLMAIDGGAFLFMNDIRISGVELSSGSYTLDLRDGSINAKNILINANLNGRRCVNLDIKNGATVQLDDFTVIRNSDNGALQNDHCIFTTQESTGGGVLRGSKIRVVSNINPDNGGAAALGRELVLLQNINFAVDKFEIQNNAPRNSGSADFKVTGCEGVCKLGKLETLHTVSHGNIDVVAPTDAFILGELNIENGFANSIQGYVGTAFLKGGATLTNTINTPNTITIP
Physico‐chemical
properties
protein length:758 AA
molecular weight: 80690,11400 Da
isoelectric point:4,58807
aromaticity:0,07388
hydropathy:-0,05211

Domains

Domains [InterPro]
DC_2319
STR
1–155
DC_2319 IPR012334 DC_2296
IPR012334
STR
159–485
IPR012334
IPR011050
STR
160–386
IPR011050
WNO23508.1
1 758
Architecture
STR
RBD
STR 1-485 | RBD 486-758
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WNO23508.1
1 758
Domain Start End Length (AA) Confidence
N-terminal 1 170 170 0,9894
Central domain 171 734 565 0,9821
C-terminal 735 758 23 0,7028
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-170
Central
171-734
C-terminal
735-758

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage pv27
[NCBI] 		3074848 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WNO23508.1 [NCBI]
Genbank nucleotide accession
OR413349.1 [NCBI]
CDS location
range 40353 -> 42629
strand +
CDS
ATGGTAGATCCAATCAACATCACAGACGTTCAAGCAAATGAAACGAATGTTGACTGGTATGCAGACGGCGAACGTGCTAATTCTTTGGTCTTAAATAGACCAATAAAGCAAATTGCCGGTATCGTTAATGAAGTTATTAATGATTTATATGGAGATGGTTCATCTGGCATATCAGAAAGAATTAGAAAGGCTCAACAGGCTGTAATAGATGGGGAAATATATGCTGGTGCTAACGACCAATACTTGGTGGTTAATGACACCATTCCAGCTAATACTCGATTTGTGAGCGTTCAGGTAGATGGAAAAACCTTGGTACTTCTATCTGCGGATGGCTCTTTATTATCGGGGAATGTTGACGCCATAGGAACATCGTTCGACTCGTTCCGAGAAGTTTCAGCAACGATAGCAACGAACCCTGTCGCACTAGTTACACTCGAAACTTATATGTACCGCCAAGGAAATCTTGCGATTGGTTGGGGATACGTTGGTGATGGAGTGGTTGATGATGCTCCAAGTTTAAATAAGGCACTTCAAGATAGTAATTTGGTCATTACACCAGTTGGTACGACACCACTTTTAAACTCTAAATTGACAGTTGGTGATTCAACTCTTAACTTTATGTTTTCTGAAGTATTAGCAGACCACAACGACCAAGTTTTCACTTTGAGCTCTGGTAAAGTTTTGAATGCAATCATTGATGGTAACGCTATGGACCACACAACATATCCGAGTGAAGTGTTGCCTGGTGATGGCGCAACTATTAAAAATGTTTTTTATAAAAACTTCCATGGTATCACTGCTTACCAAACTTATCCAATTAAACTTCCTTTGTTCGGTGCGAAAAACTTCGTCATCGAAGACGTTCAGATGGATAATATTACTCAAGACGACAATGGTGCCGTTACTGGTAAAGGTTTCGTTGGTGGAATATTTATTGAAAGTGCGACATTGGGAACACAAGAAACTACATCAAGTGGACGAGTTAAAGGTCTTACTGCTTCGAATATATATTCTGTTGATGCGGGTTCTGGTGTGGTTCAGGATAGTGACTTGATTCGTGGATATTGGGATCCGATTAATGGTGACATATCGACACTTAAATGGGATATTGATTTTATTGATATCACTGCACGAAATGTTGGTAAACGTGTTTTCAAAACAGGTGGAATTAACGGTTGTACAATCCGAAACGTTCGATGCTATAAAGATGATGGTAACGGAGATATGTATTCTGTGATCTCTTTGACATCCGAATCTAGCGACTGGGTTATCGATGGTGTTGTTGGTGAAGGTGATTTTGCTCGTGGTATTGAGTTCACTGGTAATGACCACTTAGTTGAAAACGTCAACCTTAAATCTACCGCCGCAACAACCGGTTACGGACTTCAGATGGGTGGTGCTATCGGTATCGTTCGTCGTGCGCGAGTATCAAAGGTTCACCTAGAAGGGTTTAGTTCTGGTATTTACTTCTATGATAGTTTCGATTCGACCATTTCACAAGCAACATTAAGAGATAACGCATCTTCTGTACTAACGTTCAATGCATCTGGAGGTAATGTAAACTCTATTAAAGATTTTGATATAGTTGGTGGTTTAATGGCTATTGATGGTGGAGCATTCTTATTCATGAATGATATTCGTATTTCTGGGGTTGAGCTTTCGTCTGGTTCATATACATTAGACCTGCGAGATGGTTCAATCAATGCTAAAAATATACTTATTAATGCTAACTTAAATGGTCGCCGTTGTGTGAACCTCGACATCAAGAATGGTGCAACAGTTCAATTAGATGACTTTACAGTTATTCGTAACTCGGATAACGGAGCTCTTCAAAATGACCATTGTATCTTTACTACTCAAGAAAGTACTGGTGGTGGTGTTCTTCGTGGTTCGAAGATAAGAGTCGTTTCTAATATAAACCCAGACAATGGTGGTGCGGCAGCACTTGGTCGTGAACTAGTTCTTCTACAGAATATCAACTTCGCTGTTGATAAGTTCGAGATTCAGAACAATGCACCAAGAAACTCTGGTTCAGCTGACTTCAAAGTAACTGGATGTGAGGGTGTTTGTAAATTGGGTAAACTAGAAACGTTGCACACAGTTTCCCATGGTAATATTGACGTTGTTGCTCCTACAGATGCATTTATATTAGGTGAGCTTAATATAGAAAATGGATTTGCAAACTCAATTCAAGGATATGTAGGTACTGCATTCCTTAAGGGTGGGGCTACGTTAACTAATACAATTAACACGCCTAACACAATAACAATTCCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ee64bbc0922511778b07bb0db7fa04f59b6a37f475f9100874b06796561f2e86
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7049
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50