Protein

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Genbank accession
AZU97944.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MAYDNPRPTNPVGSTELNVAKDNLITHDLMINSPDPTITTRFGKTWQTLVGISQSVSDAIRAAGGQPLNNGVWAAGQTFTAYNQFMIYNGIAYKPLDTTTLPYGPTGAAPDGAFVGPFSEYTDDKAAQGETQHIGESVFPKSFSQTAAINDTCPAGTSALRDAINNKIYLTSSTVSGTITALDFNAGTATVGGVSVTLADRVDVSDSNISTLTDLVFDSVADMLNGLPQRLPLNAVATVRGTEFKRISGDGTDLSHYEALNDLYLGAFGASDDADYSAEIQQAVDTGYPINLDKDYTFTTLTIPSAVKIKGLGSLVGFTPNGAKPTRSAMESALDQPARLALLQAYNQNTVTFTGGGDFTGRVSIENALISGDSFVCRGEMFLVNSSSTTSITANGEGTVYADGIIISDVVDDGIFCQRGGTWHAEGAIIVATGKRGIHTQMGKIYANDASVDKATQEGAFATIGGRIFAKRLRLTNGSTIGILNLYGASSEIDQCFIDGNAGAACVSESNSAIYAENGTFTNCSKGLSASYNGFIQARGGTITGNTGLAVDLLTGGYVNVQDAIIDTTNNGGGTQIRAKTLGFVIAEEPGTPGSGKDTLTTSMYIPAYNVISNGLSLITDAEDDFTEYPANETGISFAREIIMRRTTLTISAGEVTPETTWNLLEPESGTIDNLDNIARSASRRVDKVSLQLNSSGDTITIRHNQGNIRTRDGVDIVLSATAQVVDFVWNDKVGVWSQVQ
Physico‐chemical
properties
protein length:741 AA
molecular weight: 78068,63420 Da
isoelectric point:4,52674
aromaticity:0,07422
hydropathy:-0,12632

Domains

Domains [InterPro]
DC_1559
ATT
1–152
DC_1559 IPR011050
DC_1718
STR
115–263
DC_1718 DC_0504
AZU97944.1
1 741
Architecture
ATT
STR
STR
ATT 1-152 | STR 153-263 | STR 275-595 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AZU97944.1
1 741
Domain Start End Length (AA) Confidence
N-terminal 1 277 277 0,9963
Central domain 278 636 360 0,9698
C-terminal 637 741 104 0,9790
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-277
Central
278-636
C-terminal
637-741

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage LP.1
[NCBI] 		2500150 No lineage information
Host Vibrio maritimus
[NCBI] 		990268 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AZU97944.1 [NCBI]
Genbank nucleotide accession
MK249872.1 [NCBI]
CDS location
range 43633 -> 45858
strand -
CDS
ATGGCATATGACAACCCTCGCCCGACAAACCCAGTCGGCTCCACTGAGCTAAATGTGGCAAAAGATAACCTGATCACGCATGACTTGATGATCAACAGTCCCGATCCAACTATCACAACGCGCTTTGGTAAGACGTGGCAAACGCTCGTCGGCATTAGTCAATCTGTATCTGATGCCATTCGAGCGGCAGGTGGTCAGCCGCTCAACAATGGCGTATGGGCTGCGGGTCAAACGTTCACGGCTTATAATCAATTTATGATTTACAATGGCATTGCATATAAGCCTTTGGATACAACAACACTGCCATACGGCCCGACAGGTGCAGCGCCGGACGGTGCTTTCGTAGGCCCGTTCTCTGAGTACACGGACGACAAAGCCGCGCAAGGTGAAACGCAGCACATTGGCGAATCTGTTTTCCCGAAGTCGTTCAGCCAAACCGCAGCGATCAATGATACATGTCCGGCTGGCACCTCAGCCCTGCGTGACGCAATCAACAATAAAATTTATCTCACATCATCGACAGTTAGCGGCACAATTACAGCGCTTGATTTTAATGCGGGAACCGCGACGGTTGGGGGTGTTAGTGTTACGCTTGCTGATAGGGTTGATGTTAGCGATAGCAACATCTCAACGCTCACAGATTTAGTGTTTGATAGTGTTGCGGATATGCTTAATGGACTTCCGCAAAGGCTTCCATTAAATGCCGTTGCCACTGTAAGAGGTACGGAGTTCAAAAGAATTAGCGGTGACGGCACAGATCTATCTCATTACGAGGCTTTAAATGATTTATATCTGGGTGCGTTTGGGGCTTCGGATGATGCTGATTATTCGGCAGAAATTCAGCAGGCCGTCGATACAGGTTACCCGATTAATCTTGATAAGGATTACACATTCACCACATTAACAATACCAAGCGCTGTAAAAATAAAAGGGTTAGGATCACTCGTTGGTTTCACGCCGAATGGAGCAAAACCTACTAGATCGGCAATGGAATCGGCATTGGATCAGCCAGCAAGACTAGCTCTTTTGCAGGCGTACAATCAGAACACAGTTACATTTACAGGTGGCGGGGATTTTACTGGACGGGTATCTATAGAAAACGCTTTAATCTCAGGAGATTCATTCGTTTGCCGTGGTGAGATGTTTTTAGTAAATAGCTCATCGACTACATCTATAACCGCCAATGGAGAGGGTACGGTTTATGCTGATGGAATTATTATCTCAGACGTTGTTGACGATGGGATTTTTTGCCAGCGGGGAGGAACTTGGCACGCCGAAGGTGCGATAATTGTAGCAACCGGAAAGCGCGGAATACATACGCAAATGGGTAAAATTTACGCCAACGATGCCAGCGTGGATAAAGCAACACAAGAGGGTGCATTTGCCACGATTGGAGGTAGGATTTTTGCCAAACGACTAAGACTTACAAATGGATCTACAATTGGAATTCTCAATTTGTACGGCGCATCATCCGAAATAGATCAGTGTTTTATTGACGGAAATGCTGGCGCGGCCTGTGTATCAGAATCGAACTCTGCGATATATGCAGAAAACGGCACCTTCACCAATTGCTCAAAAGGTCTTTCTGCGTCTTACAATGGATTCATTCAGGCCAGGGGCGGAACGATAACCGGAAATACTGGATTAGCTGTTGATTTGTTGACTGGTGGTTACGTAAACGTTCAAGACGCGATTATAGATACAACAAATAATGGTGGCGGAACACAAATCAGAGCTAAAACTTTAGGATTTGTTATAGCCGAGGAACCAGGAACACCAGGGAGCGGCAAGGACACTCTAACGACTTCAATGTACATTCCTGCATACAATGTGATATCTAACGGTCTAAGCTTGATTACTGATGCCGAGGATGACTTTACCGAATATCCGGCCAATGAAACTGGCATATCGTTCGCTCGTGAGATAATTATGCGTAGAACTACGCTGACGATCTCCGCCGGAGAAGTCACCCCAGAAACAACTTGGAATCTCTTAGAGCCAGAGTCGGGCACAATTGATAATCTTGATAATATTGCAAGGTCTGCGTCTCGTAGAGTAGATAAGGTTAGCCTGCAGTTAAATAGCTCAGGTGACACCATTACCATTAGACATAACCAGGGCAACATCAGAACTAGGGATGGAGTCGATATAGTGCTAAGTGCCACAGCTCAAGTTGTCGATTTTGTGTGGAATGATAAAGTTGGTGTTTGGTCGCAGGTTCAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b8360d8d715ee256a1e0a5519627d154b0c4094aed945fb9cda2974a499bb26b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7192
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and Genetic Analysis of a Novel Vibrio Phage LP.1 from the the coastal water of Qingdao, China Han,Y. 2019-07-13 — GenBank