Protein

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Genbank accession
YP_009618508.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MTLYIGRKNSGEPLLHLTNTARTEAEMKTGNTFSDTLFHSGMPFLTVIDIITITEFNDAGVYPGWSPYRAGTPKVTDPATVAKLDYYFNNGYLFDARAISIAPAGVDVQGLGTFGSSTSYNRLFSSPVLNGEYKNIRVSAGISNRSAASGTPPSFDNSISAIQIASSSSNLVTLSGGLARVGDLGLRFANTSNYISNSGSASGSPSLVTNWRNITTRMLYTTGASAVGPFSYPNNGSNTALRFKVQIYIFNLKKTSNGNDYEFGRAYGNNAAIRISGQEITVGDKSIKDLSFAYTSGSYSTSTGGGRRYDEAGVLGQSLLLEHYNRSCHDWWYNIYPAANMNLRITPGGNITTTAYIEITHMALRATYKYPTLKVGDPISFEMTANEIKMRDESNNSISIAKVGSGRRLKKSYPQFKVTLPGQTNLTPPTMRAGASVYTQPTSSVVIVGLTTYTKTEVISETPIPDEFFNRVKTCHISGGLINGTLSMSSYGMNKTIGLSNIRVTTSQINADTSLPVGQLASYNFYIEQNMSYYDFYYIQATYSNGNKGSVQINYNAEVIGNTYRITRVTRSTLSSSHIRGSVITDFNITRYYDEVQSGVADNQLVINYPEVRFNLLLLGVEDK
Physico‐chemical
properties
protein length:624 AA
molecular weight: 68121,45520 Da
isoelectric point:9,10257
aromaticity:0,10577
hydropathy:-0,26186

Domains

Domains [InterPro]
IPR059609
RBD
1–52
IPR059609 DC_2140
YP_009618508.1
1 624
Architecture
RBD
STR
RBD 1-52 | STR 53-624
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009618508.1
1 624
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,5414
Central domain 11 220 211 0,7904
C-terminal 221 624 403 0,5646
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-220
C-terminal
221-624

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage JSF10
[NCBI] 		1983593 Uroviricota > Caudoviricetes > Demerecviridae > Jesfedecavirus > Jesfedecavirus JSF10
Host Vibrio cholerae
[NCBI] 		666 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009618508.1 [NCBI]
Genbank nucleotide accession
NC_042074 [NCBI]
CDS location
range 85119 -> 86993
strand +
CDS
ATGACTTTATACATTGGAAGAAAAAATAGTGGTGAACCACTATTGCACCTTACAAACACTGCTAGGACAGAAGCTGAGATGAAGACAGGGAACACGTTCTCTGACACTCTTTTTCACTCTGGCATGCCATTTCTTACTGTAATTGATATAATTACTATTACAGAATTCAATGATGCAGGAGTATACCCTGGGTGGAGCCCTTATAGGGCAGGAACCCCTAAAGTAACAGACCCAGCTACTGTAGCAAAATTAGACTACTATTTTAACAACGGTTATTTATTTGATGCTAGGGCTATAAGCATAGCCCCTGCGGGGGTGGATGTGCAAGGGTTAGGTACGTTTGGTTCTAGCACCTCGTATAATAGGCTATTCTCTAGCCCTGTACTAAATGGTGAGTACAAAAATATCAGAGTTAGTGCGGGAATCTCTAACAGGTCTGCTGCCTCAGGAACTCCGCCATCTTTTGATAACTCTATTAGCGCTATACAGATAGCGTCTTCCTCAAGTAACCTAGTCACTCTATCTGGGGGTTTAGCTAGGGTAGGGGATTTAGGTTTAAGGTTTGCTAACACCTCAAACTATATCAGTAATAGTGGCTCAGCTAGCGGGAGTCCGTCGCTGGTAACAAACTGGAGAAATATCACAACTAGGATGCTCTATACTACGGGTGCATCGGCTGTAGGTCCATTCAGCTACCCCAATAACGGCAGCAACACTGCACTGCGTTTCAAGGTTCAAATATATATCTTCAATCTCAAGAAAACTTCCAACGGCAATGACTATGAGTTTGGTAGGGCATACGGAAATAACGCGGCAATAAGGATAAGCGGACAAGAGATTACTGTAGGAGATAAGAGTATAAAAGACCTCAGCTTTGCGTACACATCAGGAAGCTACTCTACTAGCACAGGAGGGGGTAGGAGGTATGACGAAGCGGGTGTGCTAGGCCAATCCCTACTTCTGGAGCATTATAACAGATCCTGTCATGACTGGTGGTATAACATTTACCCTGCGGCAAATATGAACCTTAGGATAACCCCCGGAGGTAATATAACCACAACAGCGTATATAGAGATAACGCACATGGCTTTGAGGGCTACATATAAATACCCTACATTGAAGGTTGGAGACCCTATAAGCTTTGAGATGACGGCTAACGAGATAAAGATGCGGGACGAATCTAACAACTCTATCAGTATAGCAAAAGTAGGCTCTGGAAGGCGCTTGAAGAAGTCTTACCCACAATTTAAGGTGACCCTCCCTGGCCAGACCAACCTAACACCGCCTACGATGAGGGCAGGGGCTAGTGTTTATACTCAACCCACTAGCTCTGTAGTCATTGTGGGATTGACCACGTACACTAAGACCGAGGTCATTTCAGAGACGCCTATACCGGATGAGTTCTTCAATAGAGTTAAAACTTGCCACATTAGTGGGGGGTTAATAAATGGAACCTTGTCGATGTCATCCTATGGCATGAACAAGACTATAGGGCTATCTAATATACGCGTGACTACTAGCCAGATTAACGCAGATACTAGCTTGCCCGTGGGGCAGCTAGCGTCATATAACTTCTACATAGAACAAAATATGAGTTATTATGACTTCTATTACATTCAAGCTACATATAGTAATGGGAATAAAGGGTCGGTTCAGATAAATTATAACGCCGAGGTTATAGGCAACACATATAGAATAACTAGAGTAACCAGAAGTACCTTGAGTAGCTCTCACATTCGTGGGTCTGTTATAACGGATTTTAACATAACTAGGTACTATGATGAGGTGCAGAGCGGAGTGGCGGACAATCAATTAGTCATAAACTACCCCGAGGTGAGGTTTAATCTACTGCTTTTGGGGGTTGAGGACAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
51a4d5e46110697ad67bf3f44c9640c1f33a3254c0447287d0da72ef6b063fd6
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2327
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50