Protein

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Genbank accession
QGT52730.1 [GenBank]
Protein name
capsid and scaffold protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MDSTINGKTVHINNPLDLIGLGRREIEFNIPKADYWEMFKETMQAPTMKRGGYKNLLKGGWVFVDPNTQGRDLWTKDYFTSSGGVVWQTFGDSGDIFDYGAYESGYYNFKCPDTKNEDDYVIGNQLSFLQAGKTYTLQWDMKRTTSSIKGDIQNFIGAGTGDWTFIDTSKPFYVNGSLHSTRADGFVSWNEFIDSEDVSWHRCTIVFTCKSPITDLSKRTIRWRAKKNSSWKVKNIMMFEGSELLGTDFRLHEDEYYDWTFYEGKQGMREVSANFGFYYSEDYAFCSAFKVNIHKGFETRGFNPVTQEFECKAEVENFAQIVNPTIKYYQDIKQIPDNVNWNNTIIYNPKPNGIDYLQCKAKGNYMTLYKVRDDNYSSYVPKRWQATFFDSVPNSKWLYGGYCYTGTLQTYEIEN
Physico‐chemical
properties
protein length:415 AA
molecular weight: 48238,30610 Da
isoelectric point:5,56990
aromaticity:0,16627
hydropathy:-0,64651

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QGT52730.1
1 415
Domain Start End Length (AA) Confidence
N-terminal 1 13 13 0,8854
Central domain 14 217 205 0,2328
C-terminal 218 415 197 0,5937
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-13
Central
14-217
C-terminal
218-415

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage CHPC122
[NCBI] 		2675244 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus lactis
[NCBI] 		1358 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QGT52730.1 [NCBI]
Genbank nucleotide accession
MN689512 [NCBI]
CDS location
range 20391 -> 21638
strand +
CDS
ATGGATAGTACAATAAACGGTAAAACAGTACATATAAACAACCCATTAGACCTTATAGGCTTGGGTCGTCGTGAAATCGAGTTTAACATTCCTAAAGCTGATTATTGGGAAATGTTCAAAGAAACTATGCAAGCACCTACAATGAAACGTGGAGGGTATAAAAACTTGCTCAAAGGTGGTTGGGTATTTGTTGACCCTAACACGCAAGGTAGAGACTTGTGGACTAAAGATTACTTTACTAGTTCAGGCGGTGTTGTATGGCAAACTTTTGGAGATAGCGGAGATATTTTTGATTATGGTGCTTATGAAAGTGGGTATTATAATTTTAAGTGTCCTGATACTAAAAATGAAGATGACTATGTTATCGGAAATCAATTATCTTTTTTACAAGCAGGCAAAACTTACACTTTACAATGGGATATGAAGCGAACAACTTCTTCTATAAAAGGAGATATACAAAACTTCATAGGAGCAGGAACAGGGGACTGGACTTTTATAGACACAAGTAAACCGTTCTACGTAAATGGTTCTTTGCATTCAACAAGGGCGGACGGTTTTGTTAGTTGGAACGAGTTCATTGATTCAGAAGATGTTTCATGGCATAGGTGTACAATTGTGTTCACTTGTAAAAGTCCTATAACTGACTTGAGTAAACGAACAATACGTTGGAGAGCTAAAAAAAACAGCTCATGGAAAGTAAAAAATATTATGATGTTCGAGGGTTCTGAACTGTTGGGGACTGATTTCAGATTGCACGAAGATGAATATTATGATTGGACTTTCTACGAGGGCAAACAAGGAATGCGCGAAGTGTCAGCTAACTTTGGTTTTTATTATAGCGAAGATTATGCTTTTTGTTCAGCGTTTAAAGTCAATATACATAAAGGGTTTGAAACAAGAGGCTTCAACCCAGTTACACAAGAGTTTGAATGTAAAGCAGAAGTTGAGAACTTTGCACAAATTGTCAACCCTACAATCAAATACTATCAGGACATTAAACAAATACCTGATAATGTGAATTGGAATAATACTATCATATACAACCCTAAACCAAACGGAATAGACTACTTACAATGTAAAGCTAAAGGGAACTATATGACCTTATACAAAGTCAGAGATGATAATTATAGTTCATACGTTCCTAAACGTTGGCAAGCCACATTTTTTGATTCAGTTCCTAACAGTAAATGGTTATATGGCGGATATTGTTATACTGGTACATTACAAACATACGAAATAGAAAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4af0600e19efc17557486ea12917521b5d1e733337b8c05a5e0ce77727374f69
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4215
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome Sequences of 31 Lactococcus lactis Bacteriophages Isolated from Foods Marcelli,B., de Jong,A. and Kuipers,O.P. — — GenBank