Protein

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Genbank accession
QQO38499.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,87
Protein sequence
MRVDNLQAETTITEQGERVYSPNNKPSASDIGALPATGKAVSASTAETVGSTNLGRTDTAYITIPNAAWYANAPVGRSQMVRSNSFGLPIASAGYVFKFAARDVSKGHGWIYVAGYEGGNSRLFFGTNQLNTEAPKWVEAYSANHKPTAADVGAHPISWKPSWNDVSSKPSTATRWPKWGEISDRPGTMPPSSHTHPWSQITGIPSYATRWPKWSEVAGKPGNLLTQTTADTRYMSKNAKPDANTLDGLNSTDFSRARGSVGTGGGNWTTSQFLDWLDSQGAFAAGHWTMRGSWSYASNKKITDTGLGTILLAGCAIEVFGSRNNCTINIITPTTSSGGVTNATYTYVNNGGGYAPGWRRDYNTRNKPSAAEVGAYSKAEGDARYMYKNGNSFSGDLVSTARNKGLFGVYDSKKTDQIWSMGTAYRNHSSGTNFGNLYGLAYKHTNNKTGGTMAGGHQAVWCENGVPKAAMGSSGLWAAGQVYIGASRHTAWHNGNKPSPQTIGAEPKLSYDRKRKISYGTSNPTGGADGDVYIQYK
Physico‐chemical
properties
protein length:537 AA
molecular weight: 57536,82080 Da
isoelectric point:9,51768
aromaticity:0,10615
hydropathy:-0,60577

Domains

Domains [InterPro]
DC_1002
STR
31–272
DC_1002 DC_1142
DC_0933
STR
250–395
DC_0933
QQO38499.1
1 537
Architecture
STR
STR 31-533 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VPG01
[NCBI] 		2798882 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QQO38499.1 [NCBI]
Genbank nucleotide accession
MW398869.1 [NCBI]
CDS location
range 85011 -> 86624
strand -
CDS
ATGCGCGTTGATAATTTACAAGCAGAAACAACTATAACAGAACAAGGGGAGAGAGTATACTCTCCCAATAATAAACCAAGTGCCTCAGATATTGGGGCACTACCAGCTACAGGTAAAGCGGTTAGCGCTAGCACTGCCGAAACCGTAGGCAGCACAAACCTAGGTAGGACTGATACTGCATATATTACTATCCCAAATGCTGCATGGTACGCTAATGCTCCTGTGGGTAGATCTCAGATGGTAAGATCTAATAGTTTTGGATTACCAATAGCTTCTGCAGGGTATGTATTTAAATTTGCAGCCAGGGATGTAAGTAAAGGTCACGGTTGGATTTACGTGGCGGGCTACGAGGGTGGGAACTCTAGACTCTTCTTCGGTACTAATCAGTTGAATACTGAGGCACCAAAATGGGTTGAAGCGTATAGCGCTAACCACAAGCCTACAGCAGCCGATGTAGGTGCTCACCCAATTTCGTGGAAGCCTTCATGGAATGATGTATCTAGCAAGCCATCTACAGCTACACGTTGGCCAAAATGGGGTGAAATTAGTGATAGACCTGGTACTATGCCCCCAAGCTCCCATACCCATCCATGGTCACAAATAACAGGTATTCCTAGTTATGCAACACGTTGGCCCAAGTGGAGTGAAGTAGCTGGCAAGCCCGGTAACCTATTAACCCAAACCACTGCTGATACCCGTTATATGTCTAAGAATGCTAAGCCCGATGCTAACACCTTAGACGGATTAAACTCTACCGATTTCTCTAGAGCTAGAGGCAGCGTAGGTACTGGAGGAGGTAACTGGACCACAAGTCAGTTCCTAGATTGGTTGGATAGCCAGGGTGCTTTTGCAGCAGGTCACTGGACTATGCGAGGTAGCTGGAGTTATGCAAGTAACAAAAAGATAACAGATACTGGTCTAGGTACTATATTACTGGCAGGGTGTGCTATTGAGGTATTTGGTTCTAGAAATAATTGCACCATCAATATTATAACACCTACTACCTCATCAGGTGGAGTTACTAATGCTACTTATACCTACGTTAATAATGGCGGGGGCTACGCCCCAGGATGGAGACGCGACTATAATACACGCAATAAACCAAGTGCAGCCGAAGTAGGGGCGTATTCTAAGGCAGAGGGAGATGCCCGTTATATGTACAAGAATGGTAATAGCTTCTCAGGTGATCTAGTATCGACTGCTAGAAATAAAGGTTTATTTGGTGTATACGACTCCAAGAAGACAGACCAAATTTGGTCTATGGGTACTGCATATCGCAACCATTCTTCAGGCACTAATTTTGGTAATTTATATGGTTTAGCGTATAAGCATACTAATAATAAAACTGGTGGTACAATGGCTGGAGGACACCAAGCTGTGTGGTGTGAGAATGGTGTTCCAAAAGCTGCTATGGGTAGTAGTGGTTTGTGGGCTGCTGGTCAAGTATACATAGGTGCTAGTAGGCATACCGCATGGCATAATGGTAATAAGCCTAGCCCCCAAACAATAGGAGCCGAGCCTAAGCTATCTTATGATAGAAAACGTAAGATTTCTTACGGTACGAGTAATCCAACTGGTGGCGCTGACGGCGATGTTTATATTCAGTACAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8305a717fdb4ed53d104814e336e211c022de3512c80fe3b7cb864b4e8045c7b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6829
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Vibrio parahaemolyticus Bacteriophage VPG01 Kim,B.S. and Kim,M. 2012-06-15 — GenBank